C01

Case	Control
174	460020

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr9:20121133	rs76837099	-	C>A	17	14448	26.09	3.264e-07	3.311
chr9:20776109	rs118178650	FOCAD	C>T	21	19950	26.01	3.39e-07	2.982
chr9:20988423	rs117405838	FOCAD	G>A	18	16145	25.29	4.94e-07	3.165
chr5:129457678	rs36019821	CHSY3	A>G	19	17525	24.87	6.117e-07	3.057
chr1:107776729	rs116793293	NTNG1	G>A	24	25053	24.66	6.822e-07	2.738
chr10:91162971	rs41284946	LIPA	G>A	15	12324	24.54	7.272e-07	3.417
chr14:76556214	rs117567281	-	C>A	15	12320	24.53	7.333e-07	3.416
chr11:121913161	rs61903668	-	C>T	21	20892	23.58	1.198e-06	2.842
chr8:3117634	rs79701970	CSMD1	A>G	16	13995	23.21	1.451e-06	3.209
chr11:125269340	rs1991321	PKNOX2	G>A	67	105324	23.15	1.501e-06	1.899
chr1:57191957	rs78519994	FYB2	A>G	13	10239	22.92	1.686e-06	3.551
chr11:131115145	rs79653586	-	A>G	58	88128	22.22	2.435e-06	1.943
chr18:68393985	rs74373926	-	G>A	26	29670	22.1	2.594e-06	2.521
chr2:59113045	rs42837	-	A>G	94	165409	21.88	2.904e-06	1.742
chr4:45914327	rs13152055	-	G>A	20	20265	21.71	3.167e-06	2.794
chr4:33174132	rs77601401	-	T>G	13	10722	21.29	3.942e-06	3.409
chr7:21748327	rs117864432	DNAH11	C>T	13	10810	20.93	4.754e-06	3.377
chr9:20173766	rs72698058	-	T>C	18	17809	20.47	6.056e-06	2.847
chr1:171251600	rs28360422	FMO1	T>C	15	13626	20.47	6.063e-06	3.104
chr15:23989513	rs79448344	-	C>T	22	23897	20.44	6.14e-06	2.608
chr9:20776109	rs118178650	FOCAD	C>T	21	19390	25.9	3.599e-07	2.978
chr9:20121133	rs76837099	-	C>A	17	14186	25.48	4.472e-07	3.272
chr9:20988423	rs117405838	FOCAD	G>A	18	15800	24.85	6.202e-07	3.139
chr16:2015393	rs7193011	-	T>C	16	13271	24.3	8.229e-07	3.29
chr1:57191957	rs78519994	FYB2	A>G	12	8584	23.74	1.1e-06	3.789
chr7:117709069	rs4730821	-	C>T	56	80772	23.29	1.393e-06	1.995
chr11:131115145	rs79653586	-	A>G	58	84608	23.04	1.588e-06	1.969
chr8:3117634	rs79701970	CSMD1	A>G	16	13795	22.49	2.118e-06	3.158
chr14:76556214	rs117567281	-	C>A	14	11263	22.45	2.157e-06	3.377
chr2:59113045	rs42837	-	A>G	94	159942	22.27	2.363e-06	1.755
chr1:56123510	rs9436978	-	G>A	27	30190	22.24	2.409e-06	2.493
chr18:68393985	rs74373926	-	G>A	25	27418	21.7	3.182e-06	2.544
chr4:45914327	rs13152055	-	G>A	20	19841	21.26	4.012e-06	2.768
chr1:107776729	rs116793293	NTNG1	G>A	23	24517	21.02	4.538e-06	2.595
chr11:125269340	rs1991321	PKNOX2	G>A	66	102883	21.02	4.552e-06	1.854
chr5:6465889	rs73739320	UBE2QL1	C>T	23	24710	20.45	6.134e-06	2.562
chr5:129457678	rs36019821	CHSY3	A>G	18	17281	20.34	6.477e-06	2.841
chr10:121215348	rs2420622	GRK5	C>A	51	74067	20.32	6.566e-06	1.956
chr7:121384583	rs79037427	-	T>C	38	50031	20.25	6.794e-06	2.129
chr7:21748327	rs117864432	DNAH11	C>T	13	10683	20.21	6.941e-06	3.316

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr9:20121133

rs76837099

-

C>A

17

14448

26.09

3.264e-07

3.311

chr9:20776109

rs118178650

FOCAD

C>T

21

19950

26.01

3.39e-07

2.982

chr9:20988423

rs117405838

FOCAD

G>A

18

16145

25.29

4.94e-07

3.165

chr5:129457678

rs36019821

CHSY3

A>G

19

17525

24.87

6.117e-07

3.057

chr1:107776729

rs116793293

NTNG1

G>A

24

25053

24.66

6.822e-07

2.738

chr10:91162971

rs41284946

LIPA

G>A

15

12324

24.54

7.272e-07

3.417

chr14:76556214

rs117567281

-

C>A

15

12320

24.53

7.333e-07

3.416

chr11:121913161

rs61903668

-

C>T

21

20892

23.58

1.198e-06

2.842

chr8:3117634

rs79701970

CSMD1

A>G

16

13995

23.21

1.451e-06

3.209

chr11:125269340

rs1991321

PKNOX2

G>A

67

105324

23.15

1.501e-06

1.899

chr1:57191957

rs78519994

FYB2

A>G

13

10239

22.92

1.686e-06

3.551

chr11:131115145

rs79653586

-

A>G

58

88128

22.22

2.435e-06

1.943

chr18:68393985

rs74373926

-

G>A

26

29670

22.1

2.594e-06

2.521

chr2:59113045

rs42837

-

A>G

94

165409

21.88

2.904e-06

1.742

chr4:45914327

rs13152055

-

G>A

20

20265

21.71

3.167e-06

2.794

chr4:33174132

rs77601401

-

T>G

13

10722

21.29

3.942e-06

3.409

chr7:21748327

rs117864432

DNAH11

C>T

13

10810

20.93

4.754e-06

3.377

chr9:20173766

rs72698058

-

T>C

18

17809

20.47

6.056e-06

2.847

chr1:171251600

rs28360422

FMO1

T>C

15

13626

20.47

6.063e-06

3.104

chr15:23989513

rs79448344

-

C>T

22

23897

20.44

6.14e-06

2.608

chr9:20776109

rs118178650

FOCAD

C>T

21

19390

25.9

3.599e-07

2.978

chr9:20121133

rs76837099

-

C>A

17

14186

25.48

4.472e-07

3.272

chr9:20988423

rs117405838

FOCAD

G>A

18

15800

24.85

6.202e-07

3.139

chr16:2015393

rs7193011

-

T>C

16

13271

24.3

8.229e-07

3.29

chr1:57191957

rs78519994

FYB2

A>G

12

8584

23.74

1.1e-06

3.789

chr7:117709069

rs4730821

-

C>T

56

80772

23.29

1.393e-06

1.995

chr11:131115145

rs79653586

-

A>G

58

84608

23.04

1.588e-06

1.969

chr8:3117634

rs79701970

CSMD1

A>G

16

13795

22.49

2.118e-06

3.158

chr14:76556214

rs117567281

-

C>A

14

11263

22.45

2.157e-06

3.377

chr2:59113045

rs42837

-

A>G

94

159942

22.27

2.363e-06

1.755

chr1:56123510

rs9436978

-

G>A

27

30190

22.24

2.409e-06

2.493

chr18:68393985

rs74373926

-

G>A

25

27418

21.7

3.182e-06

2.544

chr4:45914327

rs13152055

-

G>A

20

19841

21.26

4.012e-06

2.768

chr1:107776729

rs116793293

NTNG1

G>A

23

24517

21.02

4.538e-06

2.595

chr11:125269340

rs1991321

PKNOX2

G>A

66

102883

21.02

4.552e-06

1.854

chr5:6465889

rs73739320

UBE2QL1

C>T

23

24710

20.45

6.134e-06

2.562

chr5:129457678

rs36019821

CHSY3

A>G

18

17281

20.34

6.477e-06

2.841

chr10:121215348

rs2420622

GRK5

C>A

51

74067

20.32

6.566e-06

1.956

chr7:121384583

rs79037427

-

T>C

38

50031

20.25

6.794e-06

2.129

chr7:21748327

rs117864432

DNAH11

C>T

13

10683

20.21

6.941e-06

3.316

ID	Name	Top Correlation
HP: 0000008	Abnormal morphology of female internal genitalia	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000130	Abnormality of the uterus	0/20
HP: 0000152	Abnormality of head or neck	0/20
HP: 0000153	Abnormality of the mouth	0/20
HP: 0000163	Abnormal oral cavity morphology	0/20
HP: 0000234	Abnormality of the head	0/20
HP: 0000271	Abnormality of the face	0/20
HP: 0000812	Abnormal internal genitalia	0/20
HP: 0001080	Biliary tract abnormality	0/20
HP: 0001392	Abnormality of the liver	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002664	Neoplasm	0/20
HP: 0004297	Abnormality of the biliary system	0/20
HP: 0004378	Abnormality of the anus	0/20
HP: 0005264	Abnormality of the gallbladder	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0007379	Neoplasm of the genitourinary tract	0/20
HP: 0010286	Abnormal salivary gland morphology	0/20
HP: 0010460	Abnormality of the female genitalia	0/20
HP: 0010787	Genital neoplasm	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011792	Neoplasm by histology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012437	Abnormal gallbladder morphology	0/20
HP: 0012440	Abnormal biliary tract morphology	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0012732	Anorectal anomaly	0/20
HP: 0012888	Abnormality of the uterine cervix	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0030416	Vulvar neoplasm	0/20
HP: 0031492	Epithelial neoplasm	0/20
HP: 0031493	Glandular cell neoplasm	0/20
HP: 0031495	Mucinous neoplasm	0/20
HP: 0031496	Mucinous cystic neoplasm of the pancreas	0/20
HP: 0031499	Appendiceal mucinous neoplasm	0/20
HP: 0031816	Abnormal oral morphology	0/20
HP: 0032186	Anal neoplasm	0/20
HP: 0032187	Anal intraepithelial neoplasia	0/20
HP: 0032202	Vulvar intraepithelial neoplasia	0/20
HP: 0032241	Cervical neoplasm	0/20
HP: 0032242	Cervical intraepithelial neoplasia	0/20
HP: 0100574	Biliary tract neoplasm	0/20
HP: 0100575	Neoplasm of the gallbladder	0/20
HP: 0100649	Neoplasm of the oral cavity	0/20
HP: 0100684	Salivary gland neoplasm	0/20

Malignant neoplasm of base of tongue

C01

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Malignant neoplasm of base of tongue

C01

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ