C18.6

Case	Control
247	459958

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr11:27776773	rs78453110	-	C>T	24	14653	34.46	4.345e-09	3.195
chr16:57916840	rs1477406	CNGB1	G>C	73	75522	29.81	4.763e-08	1.968
chr8:12717819	rs117089068	-	C>G	51	48333	26.47	2.675e-07	2.1
chr3:193321388	rs75811394	OPA1	T>C	27	20158	25.49	4.452e-07	2.615
chr4:123780587	rs17407626	FGF2	G>A	22	15368	24.2	8.661e-07	2.793
chr4:123986944	rs79057463	SPATA5	A>G	23	16436	24.21	8.661e-07	2.738
chr12:87232439	rs76409639	MGAT4C	G>C	23	16297	24.16	8.883e-07	2.735
chr8:133764112	rs117725783	TMEM71	T>C	26	19613	24.15	8.923e-07	2.594
chr21:31128084	rs17773164	GRIK1	A>G	28	21751	24.09	9.179e-07	2.513
chr6:17575334	rs78280862	-	C>T	18	11425	23.88	1.023e-06	3.049
chr3:197102712	rs79580105	-	C>T	21	14482	23.45	1.28e-06	2.81
chr11:95066693	rs117585142	-	G>T	33	28088	22.67	1.926e-06	2.3
chr6:7414583	rs56160149	RIOK1	G>A	16	9919	22.21	2.441e-06	3.114
chr17:53172241	rs16955571	STXBP4	A>G	53	54241	21.74	3.124e-06	1.943
chr7:22113818	rs62446123	-	C>A	47	46428	21.66	3.258e-06	2.01
chr7:6568309	rs940242	GRID2IP	G>A	42	39855	21.56	3.43e-06	2.078
chr9:3800758	rs117983182	-	A>G	20	14154	21.48	3.574e-06	2.756
chr5:177419587	rs2233788	PROP1	A>G	83	97189	21.15	4.238e-06	1.724
chr12:71346235	rs1398563	-	C>A	298	464728	20.99	4.62e-06	1.502
chr7:10652254	rs17584996	-	C>A	89	107197	20.9	4.84e-06	1.694
chr11:27776773	rs78453110	-	C>T	23	14073	31.9	1.625e-08	3.138
chr21:31128084	rs17773164	GRIK1	A>G	28	20290	27.31	1.729e-07	2.66
chr8:12717819	rs117089068	-	C>G	50	46757	25.81	3.773e-07	2.098
chr16:57916840	rs1477406	CNGB1	G>C	70	74112	25.05	5.596e-07	1.888
chr3:197102712	rs79580105	-	C>T	21	13829	25.03	5.657e-07	2.902
chr10:127291027	rs927957	TEX36	C>T	15	8450	24.27	8.365e-07	3.375
chr12:87232439	rs76409639	MGAT4C	G>C	23	16043	24.18	8.792e-07	2.739
chr7:6568309	rs940242	GRID2IP	G>A	42	38686	22.52	2.082e-06	2.113
chr7:22113818	rs62446123	-	C>A	47	45380	22.21	2.446e-06	2.03
chr8:133764112	rs117725783	TMEM71	T>C	25	19156	21.59	3.37e-06	2.513
chr11:95066693	rs117585142	-	G>T	32	27061	21.46	3.606e-06	2.279
chr4:123986944	rs79057463	SPATA5	A>G	22	16239	20.81	5.07e-06	2.608
chr4:123780587	rs17407626	FGF2	G>A	21	15190	20.69	5.398e-06	2.654
chr6:17575334	rs78280862	-	C>T	17	11128	20.54	5.854e-06	2.909
chr4:60906556	rs114609134	-	G>A	50	50252	20.33	6.53e-06	1.937
chr9:3800758	rs117983182	-	A>G	19	13275	20.29	6.639e-06	2.749
chr5:1169044	rs7719062	-	G>T	73	82510	20.26	6.773e-06	1.757
chr5:142214918	rs34104218	ARHGAP26	G>A	38	34963	20.2	6.975e-06	2.1
chr20:14652836	rs76305016	MACROD2	T>G	14	8375	20.18	7.045e-06	3.171
chr4:73741076	rs77606566	-	T>G	32	28079	20.09	7.397e-06	2.223

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr11:27776773

rs78453110

-

C>T

24

14653

34.46

4.345e-09

3.195

chr16:57916840

rs1477406

CNGB1

G>C

73

75522

29.81

4.763e-08

1.968

chr8:12717819

rs117089068

-

C>G

51

48333

26.47

2.675e-07

2.1

chr3:193321388

rs75811394

OPA1

T>C

27

20158

25.49

4.452e-07

2.615

chr4:123780587

rs17407626

FGF2

G>A

22

15368

24.2

8.661e-07

2.793

chr4:123986944

rs79057463

SPATA5

A>G

23

16436

24.21

8.661e-07

2.738

chr12:87232439

rs76409639

MGAT4C

G>C

23

16297

24.16

8.883e-07

2.735

chr8:133764112

rs117725783

TMEM71

T>C

26

19613

24.15

8.923e-07

2.594

chr21:31128084

rs17773164

GRIK1

A>G

28

21751

24.09

9.179e-07

2.513

chr6:17575334

rs78280862

-

C>T

18

11425

23.88

1.023e-06

3.049

chr3:197102712

rs79580105

-

C>T

21

14482

23.45

1.28e-06

2.81

chr11:95066693

rs117585142

-

G>T

33

28088

22.67

1.926e-06

2.3

chr6:7414583

rs56160149

RIOK1

G>A

16

9919

22.21

2.441e-06

3.114

chr17:53172241

rs16955571

STXBP4

A>G

53

54241

21.74

3.124e-06

1.943

chr7:22113818

rs62446123

-

C>A

47

46428

21.66

3.258e-06

2.01

chr7:6568309

rs940242

GRID2IP

G>A

42

39855

21.56

3.43e-06

2.078

chr9:3800758

rs117983182

-

A>G

20

14154

21.48

3.574e-06

2.756

chr5:177419587

rs2233788

PROP1

A>G

83

97189

21.15

4.238e-06

1.724

chr12:71346235

rs1398563

-

C>A

298

464728

20.99

4.62e-06

1.502

chr7:10652254

rs17584996

-

C>A

89

107197

20.9

4.84e-06

1.694

chr11:27776773

rs78453110

-

C>T

23

14073

31.9

1.625e-08

3.138

chr21:31128084

rs17773164

GRIK1

A>G

28

20290

27.31

1.729e-07

2.66

chr8:12717819

rs117089068

-

C>G

50

46757

25.81

3.773e-07

2.098

chr16:57916840

rs1477406

CNGB1

G>C

70

74112

25.05

5.596e-07

1.888

chr3:197102712

rs79580105

-

C>T

21

13829

25.03

5.657e-07

2.902

chr10:127291027

rs927957

TEX36

C>T

15

8450

24.27

8.365e-07

3.375

chr12:87232439

rs76409639

MGAT4C

G>C

23

16043

24.18

8.792e-07

2.739

chr7:6568309

rs940242

GRID2IP

G>A

42

38686

22.52

2.082e-06

2.113

chr7:22113818

rs62446123

-

C>A

47

45380

22.21

2.446e-06

2.03

chr8:133764112

rs117725783

TMEM71

T>C

25

19156

21.59

3.37e-06

2.513

chr11:95066693

rs117585142

-

G>T

32

27061

21.46

3.606e-06

2.279

chr4:123986944

rs79057463

SPATA5

A>G

22

16239

20.81

5.07e-06

2.608

chr4:123780587

rs17407626

FGF2

G>A

21

15190

20.69

5.398e-06

2.654

chr6:17575334

rs78280862

-

C>T

17

11128

20.54

5.854e-06

2.909

chr4:60906556

rs114609134

-

G>A

50

50252

20.33

6.53e-06

1.937

chr9:3800758

rs117983182

-

A>G

19

13275

20.29

6.639e-06

2.749

chr5:1169044

rs7719062

-

G>T

73

82510

20.26

6.773e-06

1.757

chr5:142214918

rs34104218

ARHGAP26

G>A

38

34963

20.2

6.975e-06

2.1

chr20:14652836

rs76305016

MACROD2

T>G

14

8375

20.18

7.045e-06

3.171

chr4:73741076

rs77606566

-

T>G

32

28079

20.09

7.397e-06

2.223

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0001626	Abnormality of the cardiovascular system	0/20
HP: 0001871	Abnormality of blood and blood-forming tissues	0/20
HP: 0001892	Abnormal bleeding	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002014	Diarrhea	0/20
HP: 0002037	Inflammation of the large intestine	0/20
HP: 0002239	Gastrointestinal hemorrhage	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002250	Abnormal large intestine morphology	0/20
HP: 0002573	Hematochezia	0/20
HP: 0002589	Gastrointestinal atresia	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0004386	Gastrointestinal inflammation	0/20
HP: 0004797	Multiple small bowel atresias	0/20
HP: 0005223	Duplicated colon	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011025	Abnormal cardiovascular system physiology	0/20
HP: 0011028	Abnormality of blood circulation	0/20
HP: 0011029	Internal hemorrhage	0/20
HP: 0011100	Intestinal atresia	0/20
HP: 0011140	Gastrointestinal duplication	0/20
HP: 0011458	Abdominal symptom	0/20
HP: 0012550	Colonic varices	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0012719	Functional abnormality of the gastrointestinal tract	0/20
HP: 0012851	Colonic stenosis	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025032	Abnormality of digestive system physiology	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0025085	Bloody diarrhea	0/20
HP: 0031368	Intestinal perforation	0/20
HP: 0031369	Colon perforation	0/20
HP: 0031813	Colonic eosinophilia	0/20
HP: 0032064	Gastrointestinal eosinophilia	0/20
HP: 0100668	Intestinal duplication	0/20

Descending colon

C18.6

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Descending colon

C18.6

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ