C18.9

Case	Control
1152	459053

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr7:24938795	rs117427275	OSBPL3	C>G	89	21141	25.72	3.956e-07	1.72
chr8:121832916	rs4129739	-	A>G	50	10063	25.27	4.981e-07	2.025
chr10:30074393	rs1927452	-	C>G	108	27241	24.66	6.849e-07	1.624
chr14:101349454	rs41286560	RTL1	G>T	98	24369	23.58	1.199e-06	1.643
chr5:160799789	rs76805041	GABRB2	T>C	71	16708	21.25	4.021e-06	1.733
chr2:67452013	rs11894761	-	A>G	1081	480300	21.18	4.174e-06	0.8282
chr5:131805735	rs2706379	AC116366.3	C>T	383	190226	21.17	4.207e-06	0.7743
chr17:39766504	rs7406899	KRT16	G>A	143	39510	21.08	4.399e-06	1.483
chr5:131801726	rs2522056	AC116366.3	G>A	382	189564	20.98	4.646e-06	0.7749
chr19:2907650	rs7254653	ZNF57	A>G	23	22879	20.59	5.696e-06	0.3991
chr20:33753262	rs6060278	-	T>C	433	211521	20.48	6.015e-06	0.7868
chr2:25709738	rs142187855	DTNB	T>C	62	14234	20.25	6.784e-06	1.773
chr4:48355959	rs421336	SLAIN2	T>C	960	344270	19.59	9.574e-06	1.202
chr20:33745676	rs6088735	-	C>T	431	209145	19.04	1.283e-05	0.7932
chr20:33744904	rs6088733	-	A>G	428	206857	18.71	1.519e-05	0.794
chr21:41762704	rs73229158	DSCAM	G>A	63	14833	18.62	1.596e-05	1.726
chr21:42610218	rs79579071	BACE2	C>T	141	39770	18.61	1.6e-05	1.452
chr5:131744574	rs1016988	-	T>C	387	189520	18.54	1.664e-05	0.7878
chr20:49637974	rs6096232	KCNG1	A>G	90	56054	18.5	1.695e-05	0.6322
chr2:21056060	rs16988099	-	A>G	65	15487	18.44	1.753e-05	1.707
chr10:30074393	rs1927452	-	C>G	107	26695	24.55	7.223e-07	1.627
chr14:101349454	rs41286560	RTL1	G>T	97	23975	22.96	1.653e-06	1.637
chr7:24938795	rs117427275	OSBPL3	C>G	86	20776	22.34	2.284e-06	1.673
chr5:160799789	rs76805041	GABRB2	T>C	68	15665	21.12	4.319e-06	1.75
chr14:24522829	rs7160909	CARMIL3	C>T	60	13382	20.96	4.683e-06	1.807
chr4:113964984	rs17045456	ANK2	T>C	51	10877	20.86	4.95e-06	1.892
chr17:39766504	rs7406899	KRT16	G>A	140	38421	20.3	6.63e-06	1.479
chr2:67452013	rs11894761	-	A>G	1026	451449	20.13	7.241e-06	0.8283
chr4:48124838	rs62298965	TXK	C>T	156	86952	19.73	8.94e-06	0.6931
chr2:25709738	rs142187855	DTNB	T>C	61	13959	19.44	1.036e-05	1.761
chr21:42610218	rs79579071	BACE2	C>T	139	38464	19.32	1.104e-05	1.467
chr2:100296588	rs111323362	AFF3	C>G	72	17299	19.01	1.302e-05	1.678
chr2:21056060	rs16988099	-	A>G	59	13444	19.0	1.31e-05	1.765
chr4:48355959	rs421336	SLAIN2	T>C	911	323025	18.97	1.331e-05	1.204
chr10:50985985	rs77553765	-	G>A	71	17069	18.7	1.526e-05	1.677
chr3:187460430	rs73886547	BCL6	G>T	114	30646	18.59	1.622e-05	1.51
chr20:39130266	rs113198936	-	G>A	154	43730	18.56	1.644e-05	1.431
chr4:20693413	rs114240136	-	C>T	54	12112	18.48	1.714e-05	1.795
chr13:27225830	rs73168059	WASF3	G>A	65	15402	18.29	1.894e-05	1.704
chr4:114482072	rs78855440	CAMK2D	G>A	132	36576	18.07	2.132e-05	1.461

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr7:24938795

rs117427275

OSBPL3

C>G

89

21141

25.72

3.956e-07

1.72

chr8:121832916

rs4129739

-

A>G

50

10063

25.27

4.981e-07

2.025

chr10:30074393

rs1927452

-

C>G

108

27241

24.66

6.849e-07

1.624

chr14:101349454

rs41286560

RTL1

G>T

98

24369

23.58

1.199e-06

1.643

chr5:160799789

rs76805041

GABRB2

T>C

71

16708

21.25

4.021e-06

1.733

chr2:67452013

rs11894761

-

A>G

1081

480300

21.18

4.174e-06

0.8282

chr5:131805735

rs2706379

AC116366.3

C>T

383

190226

21.17

4.207e-06

0.7743

chr17:39766504

rs7406899

KRT16

G>A

143

39510

21.08

4.399e-06

1.483

chr5:131801726

rs2522056

AC116366.3

G>A

382

189564

20.98

4.646e-06

0.7749

chr19:2907650

rs7254653

ZNF57

A>G

23

22879

20.59

5.696e-06

0.3991

chr20:33753262

rs6060278

-

T>C

433

211521

20.48

6.015e-06

0.7868

chr2:25709738

rs142187855

DTNB

T>C

62

14234

20.25

6.784e-06

1.773

chr4:48355959

rs421336

SLAIN2

T>C

960

344270

19.59

9.574e-06

1.202

chr20:33745676

rs6088735

-

C>T

431

209145

19.04

1.283e-05

0.7932

chr20:33744904

rs6088733

-

A>G

428

206857

18.71

1.519e-05

0.794

chr21:41762704

rs73229158

DSCAM

G>A

63

14833

18.62

1.596e-05

1.726

chr21:42610218

rs79579071

BACE2

C>T

141

39770

18.61

1.6e-05

1.452

chr5:131744574

rs1016988

-

T>C

387

189520

18.54

1.664e-05

0.7878

chr20:49637974

rs6096232

KCNG1

A>G

90

56054

18.5

1.695e-05

0.6322

chr2:21056060

rs16988099

-

A>G

65

15487

18.44

1.753e-05

1.707

chr10:30074393

rs1927452

-

C>G

107

26695

24.55

7.223e-07

1.627

chr14:101349454

rs41286560

RTL1

G>T

97

23975

22.96

1.653e-06

1.637

chr7:24938795

rs117427275

OSBPL3

C>G

86

20776

22.34

2.284e-06

1.673

chr5:160799789

rs76805041

GABRB2

T>C

68

15665

21.12

4.319e-06

1.75

chr14:24522829

rs7160909

CARMIL3

C>T

60

13382

20.96

4.683e-06

1.807

chr4:113964984

rs17045456

ANK2

T>C

51

10877

20.86

4.95e-06

1.892

chr17:39766504

rs7406899

KRT16

G>A

140

38421

20.3

6.63e-06

1.479

chr2:67452013

rs11894761

-

A>G

1026

451449

20.13

7.241e-06

0.8283

chr4:48124838

rs62298965

TXK

C>T

156

86952

19.73

8.94e-06

0.6931

chr2:25709738

rs142187855

DTNB

T>C

61

13959

19.44

1.036e-05

1.761

chr21:42610218

rs79579071

BACE2

C>T

139

38464

19.32

1.104e-05

1.467

chr2:100296588

rs111323362

AFF3

C>G

72

17299

19.01

1.302e-05

1.678

chr2:21056060

rs16988099

-

A>G

59

13444

19.0

1.31e-05

1.765

chr4:48355959

rs421336

SLAIN2

T>C

911

323025

18.97

1.331e-05

1.204

chr10:50985985

rs77553765

-

G>A

71

17069

18.7

1.526e-05

1.677

chr3:187460430

rs73886547

BCL6

G>T

114

30646

18.59

1.622e-05

1.51

chr20:39130266

rs113198936

-

G>A

154

43730

18.56

1.644e-05

1.431

chr4:20693413

rs114240136

-

C>T

54

12112

18.48

1.714e-05

1.795

chr13:27225830

rs73168059

WASF3

G>A

65

15402

18.29

1.894e-05

1.704

chr4:114482072

rs78855440

CAMK2D

G>A

132

36576

18.07

2.132e-05

1.461

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002250	Abnormal large intestine morphology	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002672	Gastrointestinal carcinoma	0/20
HP: 0003003	Colon cancer	0/20
HP: 0006749	Malignant gastrointestinal tract tumors	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0040273	Adenocarcinoma of the intestines	0/20
HP: 0040275	Adenocarcinoma of the large intestine	0/20
HP: 0040276	Adenocarcinoma of the colon	0/20
HP: 0100273	Neoplasm of the colon	0/20
HP: 0100834	Neoplasm of the large intestine	0/20

Colon, unspecified

C18.9

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Colon, unspecified

C18.9

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ