C19

Case	Control
972	459222

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr12:5920051	rs77937490	ANO2	C>T	109	32293	27.67	1.439e-07	1.671
chr16:8494293	rs55739614	-	C>T	63	56329	26.35	2.843e-07	0.524
chr12:90953811	rs2520558	-	A>G	692	385160	23.37	1.337e-06	0.7968
chr15:81661023	rs28417855	TMC3	T>C	532	304788	22.89	1.711e-06	0.7855
chr7:29000280	rs76941859	-	A>C	98	29480	22.83	1.767e-06	1.634
chr18:72055399	rs79214787	-	G>A	94	28210	22.2	2.459e-06	1.638
chr15:81625385	rs11636318	TMC3	T>C	393	233027	22.16	2.51e-06	0.7679
chr7:28975900	rs77148220	-	A>C	127	40849	22.05	2.659e-06	1.534
chr12:5906715	rs77578024	ANO2	A>G	100	30456	21.95	2.792e-06	1.611
chr16:82920788	rs76581745	CDH13	G>A	45	10982	21.83	2.982e-06	1.998
chr7:45285823	rs117018013	-	G>A	94	28248	21.81	3.009e-06	1.631
chr17:67472685	rs76856896	MAP2K6	C>T	69	19168	21.8	3.02e-06	1.76
chr14:98325761	rs2219205	-	T>C	532	214461	21.7	3.181e-06	1.265
chr18:21114145	rs117709214	NPC1	G>A	72	20296	21.58	3.398e-06	1.736
chr8:24963822	rs117920290	-	C>T	59	15780	21.43	3.675e-06	1.829
chr6:95100786	rs389555	-	C>T	114	36130	21.11	4.336e-06	1.553
chr12:50258395	rs78629008	-	G>A	55	14491	21.06	4.443e-06	1.857
chr18:64644946	rs117051340	-	A>C	60	16210	21.02	4.54e-06	1.81
chr4:59041563	rs72644608	-	G>A	63	17279	20.78	5.158e-06	1.78
chr17:52368	rs4424950	-	T>C	380	148690	20.52	5.906e-06	1.297
chr12:5920051	rs77937490	ANO2	C>T	108	31897	25.5	4.419e-07	1.642
chr12:90953811	rs2520558	-	A>G	656	360822	24.79	6.385e-07	0.7872
chr10:119354421	rs703376	-	C>A	193	65730	22.28	2.353e-06	1.429
chr5:84473995	rs10474179	-	C>T	1013	429990	21.97	2.764e-06	1.237
chr3:26877498	rs62249504	-	C>A	628	344212	21.82	2.993e-06	0.7973
chr16:82920788	rs76581745	CDH13	G>A	45	10843	21.29	3.947e-06	1.982
chr18:21114145	rs117709214	NPC1	G>A	72	19967	21.22	4.087e-06	1.729
chr12:50258395	rs78629008	-	G>A	55	14213	20.97	4.667e-06	1.855
chr18:64644946	rs117051340	-	A>C	60	15868	20.91	4.823e-06	1.808
chr8:24963822	rs117920290	-	C>T	59	15592	20.78	5.145e-06	1.813
chr18:72055399	rs79214787	-	G>A	93	27754	20.57	5.74e-06	1.613
chr5:84506498	rs13168141	-	C>T	1012	430527	20.46	6.075e-06	1.228
chr17:52368	rs4424950	-	T>C	365	139849	20.39	6.32e-06	1.303
chr12:5906715	rs77578024	ANO2	A>G	99	30065	20.07	7.447e-06	1.582
chr3:150427529	rs4234312	-	T>C	220	137845	20.01	7.71e-06	0.7266
chr11:6801825	rs11041019	-	A>G	397	154883	20.0	7.733e-06	1.287
chr7:29000280	rs76941859	-	A>C	95	28652	19.97	7.874e-06	1.595
chr7:45285823	rs117018013	-	G>A	93	27866	19.97	7.869e-06	1.602
chr6:162780995	rs79028032	PRKN	T>C	47	11806	19.77	8.733e-06	1.909
chr6:95100786	rs389555	-	C>T	112	35235	19.43	1.043e-05	1.532

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr12:5920051

rs77937490

ANO2

C>T

109

32293

27.67

1.439e-07

1.671

chr16:8494293

rs55739614

-

C>T

63

56329

26.35

2.843e-07

0.524

chr12:90953811

rs2520558

-

A>G

692

385160

23.37

1.337e-06

0.7968

chr15:81661023

rs28417855

TMC3

T>C

532

304788

22.89

1.711e-06

0.7855

chr7:29000280

rs76941859

-

A>C

98

29480

22.83

1.767e-06

1.634

chr18:72055399

rs79214787

-

G>A

94

28210

22.2

2.459e-06

1.638

chr15:81625385

rs11636318

TMC3

T>C

393

233027

22.16

2.51e-06

0.7679

chr7:28975900

rs77148220

-

A>C

127

40849

22.05

2.659e-06

1.534

chr12:5906715

rs77578024

ANO2

A>G

100

30456

21.95

2.792e-06

1.611

chr16:82920788

rs76581745

CDH13

G>A

45

10982

21.83

2.982e-06

1.998

chr7:45285823

rs117018013

-

G>A

94

28248

21.81

3.009e-06

1.631

chr17:67472685

rs76856896

MAP2K6

C>T

69

19168

21.8

3.02e-06

1.76

chr14:98325761

rs2219205

-

T>C

532

214461

21.7

3.181e-06

1.265

chr18:21114145

rs117709214

NPC1

G>A

72

20296

21.58

3.398e-06

1.736

chr8:24963822

rs117920290

-

C>T

59

15780

21.43

3.675e-06

1.829

chr6:95100786

rs389555

-

C>T

114

36130

21.11

4.336e-06

1.553

chr12:50258395

rs78629008

-

G>A

55

14491

21.06

4.443e-06

1.857

chr18:64644946

rs117051340

-

A>C

60

16210

21.02

4.54e-06

1.81

chr4:59041563

rs72644608

-

G>A

63

17279

20.78

5.158e-06

1.78

chr17:52368

rs4424950

-

T>C

380

148690

20.52

5.906e-06

1.297

chr12:5920051

rs77937490

ANO2

C>T

108

31897

25.5

4.419e-07

1.642

chr12:90953811

rs2520558

-

A>G

656

360822

24.79

6.385e-07

0.7872

chr10:119354421

rs703376

-

C>A

193

65730

22.28

2.353e-06

1.429

chr5:84473995

rs10474179

-

C>T

1013

429990

21.97

2.764e-06

1.237

chr3:26877498

rs62249504

-

C>A

628

344212

21.82

2.993e-06

0.7973

chr16:82920788

rs76581745

CDH13

G>A

45

10843

21.29

3.947e-06

1.982

chr18:21114145

rs117709214

NPC1

G>A

72

19967

21.22

4.087e-06

1.729

chr12:50258395

rs78629008

-

G>A

55

14213

20.97

4.667e-06

1.855

chr18:64644946

rs117051340

-

A>C

60

15868

20.91

4.823e-06

1.808

chr8:24963822

rs117920290

-

C>T

59

15592

20.78

5.145e-06

1.813

chr18:72055399

rs79214787

-

G>A

93

27754

20.57

5.74e-06

1.613

chr5:84506498

rs13168141

-

C>T

1012

430527

20.46

6.075e-06

1.228

chr17:52368

rs4424950

-

T>C

365

139849

20.39

6.32e-06

1.303

chr12:5906715

rs77578024

ANO2

A>G

99

30065

20.07

7.447e-06

1.582

chr3:150427529

rs4234312

-

T>C

220

137845

20.01

7.71e-06

0.7266

chr11:6801825

rs11041019

-

A>G

397

154883

20.0

7.733e-06

1.287

chr7:29000280

rs76941859

-

A>C

95

28652

19.97

7.874e-06

1.595

chr7:45285823

rs117018013

-

G>A

93

27866

19.97

7.869e-06

1.602

chr6:162780995

rs79028032

PRKN

T>C

47

11806

19.77

8.733e-06

1.909

chr6:95100786

rs389555

-

C>T

112

35235

19.43

1.043e-05

1.532

ID	Name	Top Correlation
HP: 0000085	Horseshoe kidney	6/20
HP: 0001651	Dextrocardia	10/20
HP: 0001696	Situs inversus totalis	10/20
HP: 0100542	Abnormal localization of kidney	1/20

ID	Name	Top Correlation
HP: 0000077	Abnormality of the kidney	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0001626	Abnormality of the cardiovascular system	0/20
HP: 0001627	Abnormal heart morphology	0/20
HP: 0001871	Abnormality of blood and blood-forming tissues	0/20
HP: 0001892	Abnormal bleeding	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002014	Diarrhea	0/20
HP: 0002239	Gastrointestinal hemorrhage	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002249	Melena	0/20
HP: 0002250	Abnormal large intestine morphology	0/20
HP: 0002579	Gastrointestinal dysmotility	0/20
HP: 0002664	Neoplasm	0/20
HP: 0003003	Colon cancer	0/20
HP: 0004307	Abnormal anatomic location of the heart	0/20
HP: 0004389	Intestinal pseudo-obstruction	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0010935	Abnormality of the upper urinary tract	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011025	Abnormal cardiovascular system physiology	0/20
HP: 0011028	Abnormality of blood circulation	0/20
HP: 0011029	Internal hemorrhage	0/20
HP: 0011458	Abdominal symptom	0/20
HP: 0011534	Abnormal spatial orientation of the cardiac segments	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012210	Abnormal renal morphology	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0012719	Functional abnormality of the gastrointestinal tract	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025032	Abnormality of digestive system physiology	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0025085	Bloody diarrhea	0/20
HP: 0030680	Abnormality of cardiovascular system morphology	0/20
HP: 0030895	Abnormal gastrointestinal motility	0/20
HP: 0100273	Neoplasm of the colon	0/20
HP: 0100834	Neoplasm of the large intestine	0/20

Malignant neoplasm of rectosigmoid junction

C19

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Malignant neoplasm of rectosigmoid junction

C19

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ