C26.0

Case	Control
178	460027

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr16:55596817	rs72812715	LPCAT2	T>G	46	58737	27.07	1.964e-07	2.223
chr5:171218285	rs114494033	SMIM23	T>C	15	11522	26.4	2.775e-07	3.556
chr3:59821071	rs17362486	FHIT	C>T	66	97289	26.14	3.182e-07	1.978
chr18:22923889	rs73397296	ZNF521	C>T	18	15379	26.03	3.361e-07	3.211
chr19:33334565	rs117148405	SLC7A9	A>C	14	10652	25.0	5.729e-07	3.579
chr1:207403141	rs78042401	-	T>C	25	26634	24.31	8.199e-07	2.673
chr8:16414496	rs17583220	MSR1	T>C	180	363474	23.74	1.102e-06	1.66
chr8:16407778	rs34434723	MSR1	T>G	206	423079	23.34	1.356e-06	1.652
chr5:63513927	rs115909234	RNF180	T>G	27	29528	23.18	1.475e-06	2.533
chr22:49027842	rs4925412	TAFA5	G>A	43	56899	22.92	1.693e-06	2.136
chr11:2721394	rs7940500	KCNQ1	G>C	37	46293	22.84	1.757e-06	2.241
chr7:152965768	rs71543524	-	T>C	33	39702	22.48	2.124e-06	2.317
chr4:103207765	rs17032436	SLC39A8	T>C	45	61132	22.44	2.168e-06	2.091
chr4:179683136	rs76707751	-	T>G	13	10136	22.21	2.45e-06	3.486
chr12:10298009	rs12309571	-	T>C	64	98239	22.06	2.647e-06	1.888
chr1:152918785	rs11576882	-	T>G	225	475241	21.87	2.917e-06	1.641
chr1:244373905	rs76881198	-	C>T	30	35442	21.45	3.632e-06	2.354
chr17:79636596	rs75433965	CCDC137	C>T	28	32522	21.14	4.27e-06	2.402
chr7:19110113	rs10232366	TWIST1	G>T	21	21517	20.88	4.879e-06	2.683
chr10:31152559	rs117398588	ZNF438	A>G	19	18584	20.88	4.884e-06	2.803
chr4:179683136	rs76707751	-	T>G	13	8564	28.48	9.461e-08	4.029
chr18:22923889	rs73397296	ZNF521	C>T	18	14679	27.09	1.942e-07	3.282
chr1:207403141	rs78042401	-	T>C	25	25027	26.45	2.71e-07	2.783
chr4:179586643	rs12648971	-	G>A	13	8979	26.31	2.914e-07	3.843
chr5:171218285	rs114494033	SMIM23	T>C	15	11349	25.89	3.609e-07	3.52
chr4:103207765	rs17032436	SLC39A8	T>C	45	57285	25.23	5.082e-07	2.185
chr17:79636596	rs75433965	CCDC137	C>T	27	28323	24.48	7.493e-07	2.598
chr19:1003221	rs35592366	GRIN3B	C>A	41	51465	23.86	1.034e-06	2.205
chr7:152965768	rs71543524	-	T>C	33	38104	23.41	1.311e-06	2.358
chr3:59821071	rs17362486	FHIT	C>T	64	95125	22.51	2.092e-06	1.905
chr8:16407778	rs34434723	MSR1	T>G	201	403618	22.35	2.275e-06	1.649
chr22:49027842	rs4925412	TAFA5	G>A	43	56078	22.19	2.465e-06	2.115
chr10:31152559	rs117398588	ZNF438	A>G	19	17938	21.32	3.895e-06	2.833
chr4:145585797	rs62346131	AC098588.2	T>C	26	28283	21.29	3.942e-06	2.481
chr19:33334565	rs117148405	SLC7A9	A>C	13	10104	21.28	3.959e-06	3.408
chr8:16414496	rs17583220	MSR1	T>C	175	349381	21.1	4.362e-06	1.626
chr12:10298009	rs12309571	-	T>C	63	95565	20.68	5.438e-06	1.863
chr3:186917586	rs57195580	RTP1	C>T	15	12877	20.58	5.722e-06	3.113
chr12:52960836	rs80347085	KRT74	T>C	14	11612	20.51	5.918e-06	3.217
chr11:2721394	rs7940500	KCNQ1	G>C	36	45173	20.5	5.953e-06	2.174

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr16:55596817

rs72812715

LPCAT2

T>G

46

58737

27.07

1.964e-07

2.223

chr5:171218285

rs114494033

SMIM23

T>C

15

11522

26.4

2.775e-07

3.556

chr3:59821071

rs17362486

FHIT

C>T

66

97289

26.14

3.182e-07

1.978

chr18:22923889

rs73397296

ZNF521

C>T

18

15379

26.03

3.361e-07

3.211

chr19:33334565

rs117148405

SLC7A9

A>C

14

10652

25.0

5.729e-07

3.579

chr1:207403141

rs78042401

-

T>C

25

26634

24.31

8.199e-07

2.673

chr8:16414496

rs17583220

MSR1

T>C

180

363474

23.74

1.102e-06

1.66

chr8:16407778

rs34434723

MSR1

T>G

206

423079

23.34

1.356e-06

1.652

chr5:63513927

rs115909234

RNF180

T>G

27

29528

23.18

1.475e-06

2.533

chr22:49027842

rs4925412

TAFA5

G>A

43

56899

22.92

1.693e-06

2.136

chr11:2721394

rs7940500

KCNQ1

G>C

37

46293

22.84

1.757e-06

2.241

chr7:152965768

rs71543524

-

T>C

33

39702

22.48

2.124e-06

2.317

chr4:103207765

rs17032436

SLC39A8

T>C

45

61132

22.44

2.168e-06

2.091

chr4:179683136

rs76707751

-

T>G

13

10136

22.21

2.45e-06

3.486

chr12:10298009

rs12309571

-

T>C

64

98239

22.06

2.647e-06

1.888

chr1:152918785

rs11576882

-

T>G

225

475241

21.87

2.917e-06

1.641

chr1:244373905

rs76881198

-

C>T

30

35442

21.45

3.632e-06

2.354

chr17:79636596

rs75433965

CCDC137

C>T

28

32522

21.14

4.27e-06

2.402

chr7:19110113

rs10232366

TWIST1

G>T

21

21517

20.88

4.879e-06

2.683

chr10:31152559

rs117398588

ZNF438

A>G

19

18584

20.88

4.884e-06

2.803

chr4:179683136

rs76707751

-

T>G

13

8564

28.48

9.461e-08

4.029

chr18:22923889

rs73397296

ZNF521

C>T

18

14679

27.09

1.942e-07

3.282

chr1:207403141

rs78042401

-

T>C

25

25027

26.45

2.71e-07

2.783

chr4:179586643

rs12648971

-

G>A

13

8979

26.31

2.914e-07

3.843

chr5:171218285

rs114494033

SMIM23

T>C

15

11349

25.89

3.609e-07

3.52

chr4:103207765

rs17032436

SLC39A8

T>C

45

57285

25.23

5.082e-07

2.185

chr17:79636596

rs75433965

CCDC137

C>T

27

28323

24.48

7.493e-07

2.598

chr19:1003221

rs35592366

GRIN3B

C>A

41

51465

23.86

1.034e-06

2.205

chr7:152965768

rs71543524

-

T>C

33

38104

23.41

1.311e-06

2.358

chr3:59821071

rs17362486

FHIT

C>T

64

95125

22.51

2.092e-06

1.905

chr8:16407778

rs34434723

MSR1

T>G

201

403618

22.35

2.275e-06

1.649

chr22:49027842

rs4925412

TAFA5

G>A

43

56078

22.19

2.465e-06

2.115

chr10:31152559

rs117398588

ZNF438

A>G

19

17938

21.32

3.895e-06

2.833

chr4:145585797

rs62346131

AC098588.2

T>C

26

28283

21.29

3.942e-06

2.481

chr19:33334565

rs117148405

SLC7A9

A>C

13

10104

21.28

3.959e-06

3.408

chr8:16414496

rs17583220

MSR1

T>C

175

349381

21.1

4.362e-06

1.626

chr12:10298009

rs12309571

-

T>C

63

95565

20.68

5.438e-06

1.863

chr3:186917586

rs57195580

RTP1

C>T

15

12877

20.58

5.722e-06

3.113

chr12:52960836

rs80347085

KRT74

T>C

14

11612

20.51

5.918e-06

3.217

chr11:2721394

rs7940500

KCNQ1

G>C

36

45173

20.5

5.953e-06

2.174

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000707	Abnormality of the nervous system	0/20
HP: 0000759	Abnormal peripheral nervous system morphology	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002672	Gastrointestinal carcinoma	0/20
HP: 0004375	Neoplasm of the nervous system	0/20
HP: 0004390	Hamartomatous polyposis	0/20
HP: 0005266	Intestinal polyp	0/20
HP: 0006749	Malignant gastrointestinal tract tumors	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0010566	Hamartoma	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011792	Neoplasm by histology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012639	Abnormal nervous system morphology	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0030411	Jejunal adenocarcinoma	0/20
HP: 0030412	Ileal adenocarcinoma	0/20
HP: 0040273	Adenocarcinoma of the intestines	0/20
HP: 0040274	Adenocarcinoma of the small intestine	0/20
HP: 0100007	Neoplasm of the peripheral nervous system	0/20
HP: 0100568	Neoplasm of the endocrine system	0/20
HP: 0100570	Carcinoid tumor	0/20
HP: 0100634	Neuroendocrine neoplasm	0/20
HP: 0100833	Neoplasm of the small intestine	0/20

Intestinal tract, part unspecified

C26.0

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Intestinal tract, part unspecified

C26.0

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ