Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Malignant neoplasm of bronchus and lung
Sub Class
Bronchus or lung, unspecified
C34.9
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2096
458109
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:78857939
rs55853698
CHRNA5
T>G
1602
315813
37.92
7.376e-10
1.214
chr15:78806023
rs8034191
HYKK
T>C
1608
317814
36.41
1.603e-09
1.209
chr15:78857986
rs55781567
CHRNA5
C>G
1611
319709
34.18
5.017e-09
1.202
chr15:78802869
rs9788721
HYKK
T>C
1656
328958
34.1
5.236e-09
1.2
chr15:78882925
rs16969968
CHRNA5
G>A
1574
311820
33.98
5.557e-09
1.202
chr15:78814046
rs10519203
HYKK
A>G
1622
322792
32.48
1.206e-08
1.196
chr15:78878541
rs951266
CHRNA5
G>A
1571
312010
32.33
1.299e-08
1.197
chr15:78868636
rs72740964
CHRNA5
G>A
1549
307731
31.99
1.547e-08
1.197
chr15:78826180
rs931794
HYKK
A>G
1615
322418
31.21
2.32e-08
1.192
chr15:78873993
rs7180002
CHRNA5
A>T
1567
311926
30.92
2.69e-08
1.192
chr15:78894339
rs1051730
CHRNA3
G>A
1569
312577
30.63
3.119e-08
1.191
chr15:78783277
rs11858836
IREB2
G>A
1515
300884
30.42
3.485e-08
1.192
chr15:78898723
rs12914385
CHRNA3
C>T
1801
363163
30.32
3.659e-08
1.185
chr15:78896129
rs1317286
CHRNA3
A>G
1596
318496
30.21
3.875e-08
1.189
chr15:78867482
rs17486278
CHRNA5
A>C
1591
318332
29.08
6.946e-08
1.185
chr15:78911672
rs4243084
CHRNA3
G>C
1601
321114
27.87
1.298e-07
1.181
chr15:78956806
rs1996371
CHRNB4
T>C
1871
381520
27.46
1.608e-07
1.175
chr15:78911181
rs8040868
CHRNA3
T>C
1855
377116
27.24
1.795e-07
1.174
chr5:33951693
rs16891982
SLC45A2
G>C
212
66849
27.18
1.852e-07
0.6937
chr5:18502510
rs114922849
-
C>T
96
12861
25.82
3.743e-07
1.683
chr15:78802869
rs9788721
HYKK
T>C
1603
310978
33.86
5.929e-09
1.203
chr15:78857939
rs55853698
CHRNA5
T>G
1570
305877
31.7
1.797e-08
1.197
chr15:78806023
rs8034191
HYKK
T>C
1569
305964
30.95
2.642e-08
1.195
chr15:78857986
rs55781567
CHRNA5
C>G
1567
305812
30.49
3.361e-08
1.193
chr15:78826180
rs931794
HYKK
A>G
1570
307123
29.53
5.511e-08
1.19
chr15:78814046
rs10519203
HYKK
A>G
1571
307381
28.82
7.943e-08
1.187
chr15:78882925
rs16969968
CHRNA5
G>A
1545
302403
28.41
9.833e-08
1.186
chr15:78878541
rs951266
CHRNA5
G>A
1540
301536
27.84
1.317e-07
1.185
chr15:78867482
rs17486278
CHRNA5
A>C
1545
302680
27.76
1.376e-07
1.184
chr15:78911672
rs4243084
CHRNA3
G>C
1565
307312
26.91
2.134e-07
1.181
chr15:78898723
rs12914385
CHRNA3
C>T
1760
349098
26.7
2.381e-07
1.176
chr15:78894339
rs1051730
CHRNA3
G>A
1539
302044
26.67
2.407e-07
1.18
chr15:78873993
rs7180002
CHRNA5
A>T
1536
301453
26.66
2.425e-07
1.181
chr15:78868636
rs72740964
CHRNA5
G>A
1520
298350
26.21
3.066e-07
1.18
chr15:78896129
rs1317286
CHRNA3
A>G
1551
304736
26.16
3.135e-07
1.178
chr5:18502510
rs114922849
-
C>T
95
12573
24.54
7.273e-07
1.666
chr15:78911181
rs8040868
CHRNA3
T>C
1798
358953
24.35
8.04e-07
1.167
chr15:78783277
rs11858836
IREB2
G>A
1484
291885
24.06
9.33e-07
1.172
chr13:54177189
rs1336929
-
G>A
2244
457072
22.38
2.237e-06
1.158
chr6:12124855
rs2228213
HIVEP1
G>A
1306
316226
20.65
5.52e-06
0.8591
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000765
Abnormality of the thorax
1/20
HP: 0001608
Abnormality of the voice
2/20
HP: 0001686
Loss of voice
16/20
HP: 0001707
Abnormal right ventricle morphology
1/20
HP: 0002087
Abnormality of the upper respiratory tract
1/20
HP: 0002103
Abnormality of the pleura
4/20
HP: 0002659
Increased susceptibility to fractures
1/20
HP: 0002664
Neoplasm
1/20
HP: 0002757
Recurrent fractures
4/20
HP: 0002778
Abnormal trachea morphology
9/20
HP: 0002898
Embryonal neoplasm
1/20
HP: 0005133
Right ventricular dilatation
19/20
HP: 0005607
Abnormal tracheobronchial morphology
1/20
HP: 0006640
Multiple rib fractures
17/20
HP: 0009792
Teratoma
1/20
HP: 0011793
Neoplasm by anatomical site
1/20
HP: 0030741
Mediastinal teratoma
19/20
HP: 0030875
Abnormality of pulmonary circulation
1/20
HP: 0031225
Intrapulmonary shunt
12/20
HP: 0100001
Malignant mesothelioma
7/20
HP: 0100002
Pleural mesothelioma
10/20
HP: 0100526
Neoplasm of the lung
1/20
HP: 0100527
Neoplasia of the pleura
9/20
HP: 0100551
Neoplasm of the trachea
19/20
HP: 0100552
Neoplasm of the tracheobronchial system
14/20
HP: 0100606
Neoplasm of the respiratory system
2/20
HP: 0100728
Germ cell neoplasia
1/20
HP: 0100750
Atelectasis
2/20
ID
Name
Top Correlation
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000772
Abnormality of the ribs
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0001547
Abnormality of the rib cage
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001627
Abnormal heart morphology
0/20
HP: 0001713
Abnormal cardiac ventricle morphology
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002088
Abnormal lung morphology
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0003330
Abnormal bone structure
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0010785
Gonadal neoplasm
0/20
HP: 0010787
Genital neoplasm
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011792
Neoplasm by histology
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0011843
Abnormality of skeletal physiology
0/20
HP: 0012252
Abnormal respiratory system morphology
0/20
HP: 0030163
Abnormal vascular physiology
0/20
HP: 0030680
Abnormality of cardiovascular system morphology
0/20