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ICD-10
HPO
Compare GWAS
Super Class
Other malignant neoplasms of skin
Sub Class
Skin of lip
C44.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
469
459736
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr5:33951693
rs16891982
SLC45A2
G>C
11
67050
48.22
3.804e-12
0.1593
chr5:33958959
rs28777
SLC45A2
A>C
9
56986
41.01
1.511e-10
0.1551
chr5:84429871
rs115613110
-
A>G
56
29498
26.89
2.149e-07
2.015
chr5:33955326
rs35390
SLC45A2
A>C
8
41141
26.64
2.454e-07
0.1936
chr5:33955673
rs35391
SLC45A2
C>T
8
40974
26.49
2.65e-07
0.1943
chr14:22871740
rs113497175
-
T>C
55
29246
26.17
3.124e-07
2.009
chr15:48426484
rs1426654
SLC24A5
A>G
1
27525
25.46
4.51e-07
0.03642
chr17:38974634
rs117588718
KRT10
G>A
70
40367
24.9
6.038e-07
1.842
chr3:31076846
rs1485929
-
G>A
136
204228
24.82
6.281e-07
0.6326
chr7:75611678
rs41299517
POR
A>G
45
22670
24.58
7.124e-07
2.098
chr2:45902547
rs3213438
PRKCE
A>C
31
13619
24.51
7.393e-07
2.403
chr5:31677085
rs6891459
PDZD2
T>C
518
455382
24.08
9.259e-07
1.376
chr2:150076526
rs79451428
-
A>C
28
11843
23.92
1.004e-06
2.479
chr7:107702877
rs2286251
LAMB4
C>A
14
47853
23.87
1.031e-06
0.2907
chr3:147490113
rs2319186
-
A>G
477
415380
23.59
1.194e-06
1.37
chr5:20538856
rs78061468
CDH18
T>C
80
48905
23.33
1.366e-06
1.747
chr22:28895670
rs9613637
TTC28
T>C
61
34608
23.25
1.423e-06
1.875
chr14:76169229
rs76888260
TTLL5
G>A
36
17085
23.24
1.427e-06
2.223
chr1:752721
rs3131972
-
G>A
106
165877
23.16
1.49e-06
0.6118
chr11:1690791
rs12802112
-
A>G
351
290248
22.99
1.625e-06
1.38
chr5:84429871
rs115613110
-
A>G
56
28304
26.13
3.195e-07
1.996
chr19:54467802
rs79106024
CACNG8
G>A
82
47353
25.01
5.717e-07
1.77
chr14:22871740
rs113497175
-
T>C
55
28529
24.15
8.914e-07
1.957
chr19:54471309
rs74801490
CACNG8
A>C
81
47250
23.4
1.314e-06
1.743
chr12:66081782
rs117869580
-
C>T
29
11987
23.23
1.435e-06
2.415
chr2:45902547
rs3213438
PRKCE
A>C
31
13263
22.95
1.662e-06
2.34
chr7:75611678
rs41299517
POR
A>G
45
22286
22.26
2.385e-06
2.027
chr2:150076526
rs79451428
-
A>C
28
11731
21.64
3.293e-06
2.378
chr8:26375461
rs13281193
DPYSL2
G>A
34
15409
21.5
3.536e-06
2.204
chr2:234993678
rs72978247
-
C>T
37
17270
21.47
3.59e-06
2.138
chr5:20538856
rs78061468
CDH18
T>C
80
47559
21.31
3.906e-06
1.705
chr22:28895670
rs9613637
TTC28
T>C
61
33981
20.77
5.181e-06
1.814
chr14:29202030
rs66997911
-
A>G
82
49393
20.76
5.198e-06
1.684
chr12:18787066
rs12297038
PIK3C2G
T>C
43
21595
20.45
6.123e-06
1.999
chr12:83670920
rs143578267
-
G>T
25
10254
20.43
6.17e-06
2.43
chr17:38974634
rs117588718
KRT10
G>A
69
39794
20.36
6.422e-06
1.747
chr18:25557305
rs17445742
CDH2
G>T
106
68758
20.1
7.348e-06
1.582
chr14:76169229
rs76888260
TTLL5
G>A
35
16665
19.45
1.033e-05
2.103
chr2:178198765
rs13032354
NFE2L2
C>A
79
48094
19.37
1.074e-05
1.669
chr12:18706892
rs117095990
PIK3C2G
A>G
41
20631
19.29
1.123e-05
1.991
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000077
Abnormality of the kidney
1/20
HP: 0000095
Abnormality of renal glomerulus morphology
5/20
HP: 0000118
Phenotypic abnormality
2/20
HP: 0000152
Abnormality of head or neck
1/20
HP: 0000160
Narrow mouth
6/20
HP: 0000234
Abnormality of the head
1/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000958
Dry skin
3/20
HP: 0000961
Cyanosis
1/20
HP: 0001063
Acrocyanosis
1/20
HP: 0001595
Abnormal hair morphology
5/20
HP: 0002086
Abnormality of the respiratory system
1/20
HP: 0002664
Neoplasm
3/20
HP: 0002860
Squamous cell carcinoma
5/20
HP: 0003328
Abnormal hair laboratory examination
7/20
HP: 0003777
Pili torti
9/20
HP: 0004722
Thickening of the glomerular basement membrane
5/20
HP: 0006739
Squamous cell carcinoma of the skin
5/20
HP: 0006919
Abnormal aggressive, impulsive or violent behavior
2/20
HP: 0008069
Neoplasm of the skin
4/20
HP: 0010935
Abnormality of the upper urinary tract
1/20
HP: 0011035
Abnormal renal cortex morphology
3/20
HP: 0011121
Abnormality of skin morphology
3/20
HP: 0011138
Abnormality of skin adnexa morphology
5/20
HP: 0011337
Abnormality of mouth size
6/20
HP: 0011354
Generalized abnormality of skin
1/20
HP: 0011793
Neoplasm by anatomical site
3/20
HP: 0012166
Skin-picking
4/20
HP: 0012210
Abnormal renal morphology
1/20
HP: 0031263
Abnormal renal corpuscle morphology
5/20
HP: 0100716
Self-injurious behavior
2/20
HP: 0100851
Abnormal emotion/affect behavior
3/20
ID
Name
Top Correlation
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001005
Dermatological manifestations of systemic disorders
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0012575
Abnormal nephron morphology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20