C48.2

Case	Control
157	460048

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr21:22443778	rs117790364	NCAM2	G>A	18	15749	33.43	7.373e-09	3.703
chr6:137939612	rs118113693	-	T>C	21	20887	30.9	2.711e-08	3.273
chr1:31683878	rs75239059	NKAIN1	A>G	27	31465	29.37	5.993e-08	2.839
chr2:183940667	rs55900433	-	C>T	13	10196	29.05	7.054e-08	4.09
chr8:126131876	rs117766003	NSMCE2	A>C	17	15845	27.89	1.283e-07	3.447
chr5:38226706	rs75938462	-	G>T	14	12327	25.66	4.063e-07	3.647
chr14:79542164	rs61992485	NRXN3	A>G	24	28188	25.6	4.206e-07	2.799
chr6:168302899	rs12190320	AFDN	A>G	20	21562	25.08	5.51e-07	3.008
chr2:20926296	rs56078519	LDAH	A>G	29	37677	24.4	7.817e-07	2.533
chr19:38384689	rs116031239	WDR87	C>T	12	9975	24.28	8.332e-07	3.846
chr18:4379584	rs79012808	DLGAP1	C>T	19	20715	23.9	1.015e-06	3.01
chr21:38117582	rs11910583	SIM2	T>C	22	25451	23.88	1.026e-06	2.813
chr4:68907485	rs62300850	-	T>G	26	33155	23.86	1.034e-06	2.623
chr5:55288899	rs71624106	IL6ST	G>A	28	36186	23.82	1.058e-06	2.541
chr7:95876687	rs62472365	SLC25A13	T>C	26	32420	23.77	1.083e-06	2.615
chr8:142177251	rs372758	DENND3	G>A	34	47738	23.77	1.086e-06	2.361
chr1:192523917	rs17676711	-	G>A	12	10129	23.55	1.214e-06	3.779
chr5:93090465	rs75352984	FAM172A	A>G	21	24013	23.3	1.384e-06	2.838
chr7:1479659	rs61287564	MICALL2	T>C	39	58060	22.95	1.663e-06	2.222
chr7:119399196	rs117593598	-	T>C	21	24240	22.73	1.86e-06	2.805
chr21:22443778	rs117790364	NCAM2	G>A	18	15558	30.73	2.971e-08	3.53
chr8:142177251	rs372758	DENND3	G>A	34	40545	30.69	3.028e-08	2.633
chr6:137939612	rs118113693	-	T>C	21	20103	29.67	5.111e-08	3.204
chr1:31683878	rs75239059	NKAIN1	A>G	27	30903	26.82	2.23e-07	2.721
chr2:183940667	rs55900433	-	C>T	13	10088	26.76	2.301e-07	3.893
chr8:126131876	rs117766003	NSMCE2	A>C	17	15430	26.24	3.009e-07	3.335
chr7:1479659	rs61287564	MICALL2	T>C	39	53306	24.66	6.826e-07	2.285
chr14:79542164	rs61992485	NRXN3	A>G	24	27299	24.11	9.098e-07	2.722
chr19:38384689	rs116031239	WDR87	C>T	12	9496	23.86	1.035e-06	3.808
chr15:23814666	rs6576462	MKRN3	T>C	11	8361	23.62	1.173e-06	3.977
chr5:38226706	rs75938462	-	G>T	14	12179	23.57	1.205e-06	3.476
chr7:1480280	rs58636013	MICALL2	C>T	39	54988	23.13	1.518e-06	2.229
chr6:168302899	rs12190320	AFDN	A>G	20	21160	23.06	1.572e-06	2.886
chr7:109610691	rs12113795	-	C>T	10	7192	22.77	1.825e-06	4.113
chr19:2569889	rs56963541	GNG7	C>A	17	16688	22.34	2.284e-06	3.066
chr5:93090465	rs75352984	FAM172A	A>G	21	23144	22.2	2.456e-06	2.773
chr7:95876687	rs62472365	SLC25A13	T>C	26	31500	22.13	2.548e-06	2.534
chr18:4379584	rs79012808	DLGAP1	C>T	19	20329	21.98	2.757e-06	2.888
chr2:20926296	rs56078519	LDAH	A>G	29	37102	21.91	2.852e-06	2.42
chr4:68907485	rs62300850	-	T>G	26	32413	21.89	2.884e-06	2.525

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr21:22443778

rs117790364

NCAM2

G>A

18

15749

33.43

7.373e-09

3.703

chr6:137939612

rs118113693

-

T>C

21

20887

30.9

2.711e-08

3.273

chr1:31683878

rs75239059

NKAIN1

A>G

27

31465

29.37

5.993e-08

2.839

chr2:183940667

rs55900433

-

C>T

13

10196

29.05

7.054e-08

4.09

chr8:126131876

rs117766003

NSMCE2

A>C

17

15845

27.89

1.283e-07

3.447

chr5:38226706

rs75938462

-

G>T

14

12327

25.66

4.063e-07

3.647

chr14:79542164

rs61992485

NRXN3

A>G

24

28188

25.6

4.206e-07

2.799

chr6:168302899

rs12190320

AFDN

A>G

20

21562

25.08

5.51e-07

3.008

chr2:20926296

rs56078519

LDAH

A>G

29

37677

24.4

7.817e-07

2.533

chr19:38384689

rs116031239

WDR87

C>T

12

9975

24.28

8.332e-07

3.846

chr18:4379584

rs79012808

DLGAP1

C>T

19

20715

23.9

1.015e-06

3.01

chr21:38117582

rs11910583

SIM2

T>C

22

25451

23.88

1.026e-06

2.813

chr4:68907485

rs62300850

-

T>G

26

33155

23.86

1.034e-06

2.623

chr5:55288899

rs71624106

IL6ST

G>A

28

36186

23.82

1.058e-06

2.541

chr7:95876687

rs62472365

SLC25A13

T>C

26

32420

23.77

1.083e-06

2.615

chr8:142177251

rs372758

DENND3

G>A

34

47738

23.77

1.086e-06

2.361

chr1:192523917

rs17676711

-

G>A

12

10129

23.55

1.214e-06

3.779

chr5:93090465

rs75352984

FAM172A

A>G

21

24013

23.3

1.384e-06

2.838

chr7:1479659

rs61287564

MICALL2

T>C

39

58060

22.95

1.663e-06

2.222

chr7:119399196

rs117593598

-

T>C

21

24240

22.73

1.86e-06

2.805

chr21:22443778

rs117790364

NCAM2

G>A

18

15558

30.73

2.971e-08

3.53

chr8:142177251

rs372758

DENND3

G>A

34

40545

30.69

3.028e-08

2.633

chr6:137939612

rs118113693

-

T>C

21

20103

29.67

5.111e-08

3.204

chr1:31683878

rs75239059

NKAIN1

A>G

27

30903

26.82

2.23e-07

2.721

chr2:183940667

rs55900433

-

C>T

13

10088

26.76

2.301e-07

3.893

chr8:126131876

rs117766003

NSMCE2

A>C

17

15430

26.24

3.009e-07

3.335

chr7:1479659

rs61287564

MICALL2

T>C

39

53306

24.66

6.826e-07

2.285

chr14:79542164

rs61992485

NRXN3

A>G

24

27299

24.11

9.098e-07

2.722

chr19:38384689

rs116031239

WDR87

C>T

12

9496

23.86

1.035e-06

3.808

chr15:23814666

rs6576462

MKRN3

T>C

11

8361

23.62

1.173e-06

3.977

chr5:38226706

rs75938462

-

G>T

14

12179

23.57

1.205e-06

3.476

chr7:1480280

rs58636013

MICALL2

C>T

39

54988

23.13

1.518e-06

2.229

chr6:168302899

rs12190320

AFDN

A>G

20

21160

23.06

1.572e-06

2.886

chr7:109610691

rs12113795

-

C>T

10

7192

22.77

1.825e-06

4.113

chr19:2569889

rs56963541

GNG7

C>A

17

16688

22.34

2.284e-06

3.066

chr5:93090465

rs75352984

FAM172A

A>G

21

23144

22.2

2.456e-06

2.773

chr7:95876687

rs62472365

SLC25A13

T>C

26

31500

22.13

2.548e-06

2.534

chr18:4379584

rs79012808

DLGAP1

C>T

19

20329

21.98

2.757e-06

2.888

chr2:20926296

rs56078519

LDAH

A>G

29

37102

21.91

2.852e-06

2.42

chr4:68907485

rs62300850

-

T>G

26

32413

21.89

2.884e-06

2.525

ID	Name	Top Correlation
HP: 0003172	Abnormality of the pubic bone	13/20
HP: 0003183	Wide pubic symphysis	12/20

ID	Name	Top Correlation
HP: 0000008	Abnormal morphology of female internal genitalia	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000080	Abnormality of reproductive system physiology	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000130	Abnormality of the uterus	0/20
HP: 0000812	Abnormal internal genitalia	0/20
HP: 0000924	Abnormality of the skeletal system	0/20
HP: 0001367	Abnormal joint morphology	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002585	Abnormality of the peritoneum	0/20
HP: 0002586	Peritonitis	0/20
HP: 0002644	Abnormality of pelvic girdle bone morphology	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0002813	Abnormality of limb bone morphology	0/20
HP: 0002814	Abnormality of the lower limb	0/20
HP: 0003037	Enlarged joints	0/20
HP: 0003272	Abnormality of the hip bone	0/20
HP: 0004298	Abnormality of the abdominal wall	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0010460	Abnormality of the female genitalia	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011792	Neoplasm by histology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0011842	Abnormality of skeletal morphology	0/20
HP: 0011844	Abnormal appendicular skeleton morphology	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0030012	Abnormal female reproductive system physiology	0/20
HP: 0030126	Abnormality of the endometrium	0/20
HP: 0030127	Endometriosis	0/20
HP: 0030406	Primary peritoneal carcinoma	0/20
HP: 0031105	Abnormal uterus morphology	0/20
HP: 0031492	Epithelial neoplasm	0/20
HP: 0031493	Glandular cell neoplasm	0/20
HP: 0031495	Mucinous neoplasm	0/20
HP: 0031499	Appendiceal mucinous neoplasm	0/20
HP: 0040064	Abnormality of limbs	0/20
HP: 0040068	Abnormality of limb bone	0/20
HP: 0040069	Abnormal lower limb bone morphology	0/20
HP: 0045073	Serositis	0/20
HP: 0100001	Malignant mesothelioma	0/20
HP: 0100003	Peritoneal mesothelioma	0/20
HP: 0100016	Abnormality of mesentery morphology	0/20

Peritoneum, unspecified

C48.2

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Peritoneum, unspecified

C48.2

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ