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ICD-10
HPO
Compare GWAS
Super Class
Malignant neoplasms of urinary tract
Sub Class
Malignant neoplasm of kidney, except renal pelvis
C64
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1383
458811
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr11:69239741
rs7105934
-
G>A
181
91319
31.98
1.554e-08
0.6496
chr7:141811433
rs10952516
-
C>T
1494
461170
23.81
1.064e-06
1.2
chr1:8379448
rs11121162
SLC45A1
A>G
1348
413832
23.76
1.091e-06
1.2
chr8:24691936
rs1157465
-
T>C
637
254345
22.95
1.663e-06
0.8064
chr8:24691440
rs4871930
-
A>G
592
238424
22.78
1.813e-06
0.8024
chr20:59454299
rs4810210
-
T>C
310
81249
22.21
2.439e-06
1.327
chr2:182511989
rs12987841
CERKL
C>T
92
19285
21.99
2.747e-06
1.637
chr19:44210377
rs511654
-
G>A
853
328517
21.75
3.099e-06
0.8266
chr5:24805795
rs1493245
-
G>T
99
52575
21.48
3.567e-06
0.6249
chr7:131775809
rs75404284
-
C>T
107
23542
21.0
4.584e-06
1.567
chr17:68199173
rs78011864
-
A>T
70
13863
20.95
4.707e-06
1.731
chr18:54574305
rs72919436
WDR7
C>T
63
12136
20.73
5.281e-06
1.775
chr16:80622028
rs4516240
-
C>A
726
283651
20.48
6.02e-06
0.8234
chr1:225876914
rs61850617
-
G>A
76
15518
20.05
7.543e-06
1.675
chr1:8481016
rs301805
RERE
G>T
1301
401070
20.05
7.544e-06
1.183
chr15:48426484
rs1426654
SLC24A5
A>G
42
27484
19.39
1.068e-05
0.5106
chr15:93800857
rs11074153
-
G>A
124
61535
19.31
1.111e-05
0.6695
chr10:117649124
rs7904803
ATRNL1
C>A
23
18663
19.25
1.146e-05
0.4108
chr8:111455605
rs16880715
-
G>T
260
113655
19.13
1.223e-05
0.7529
chr1:236291032
rs10924293
-
A>G
1000
302845
19.05
1.27e-05
1.187
chr10:83757021
rs10884019
NRG3
G>A
307
77022
26.29
2.939e-07
1.363
chr1:8379448
rs11121162
SLC45A1
A>G
1288
384319
26.05
3.324e-07
1.215
chr11:117750955
rs11216599
-
A>G
165
37716
24.04
9.426e-07
1.48
chr18:54574305
rs72919436
WDR7
C>T
62
11232
23.52
1.238e-06
1.849
chr11:69239741
rs7105934
-
G>A
162
77016
23.04
1.588e-06
0.6793
chr23:38864970
rs5917678
-
T>G
253
123012
22.07
2.63e-06
0.7273
chr20:59454299
rs4810210
-
T>C
290
73927
21.84
2.967e-06
1.336
chr11:117787517
rs4938455
TMPRSS13
G>A
76
14883
21.82
2.995e-06
1.713
chr2:182511989
rs12987841
CERKL
C>T
91
18726
21.53
3.476e-06
1.634
chr7:131775809
rs75404284
-
C>T
105
22572
20.8
5.104e-06
1.57
chr3:32320408
rs7644602
CMTM8
T>G
1089
400341
20.57
5.743e-06
0.8381
chr17:68199173
rs78011864
-
A>T
70
13686
20.33
6.518e-06
1.717
chr23:12873044
rs6530584
-
C>T
258
74544
20.09
7.373e-06
1.35
chr13:63197103
rs61056895
-
G>T
269
68676
20.05
7.529e-06
1.332
chr1:225876914
rs61850617
-
G>A
76
15310
19.46
1.028e-05
1.663
chr1:221173679
rs41369246
-
G>T
125
28216
19.34
1.095e-05
1.493
chr7:141811433
rs10952516
-
C>T
1462
446086
19.24
1.154e-05
1.182
chr15:70339603
rs76712537
-
T>C
765
289101
18.85
1.415e-05
0.8313
chr4:63605709
rs4380554
-
A>T
147
34411
18.6
1.612e-05
1.44
chr3:115102594
rs114995852
-
G>A
79
16327
18.26
1.923e-05
1.623
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
1/20
HP: 0000009
Functional abnormality of the bladder
1/20
HP: 0000010
Recurrent urinary tract infections
1/20
HP: 0000011
Neurogenic bladder
1/20
HP: 0000014
Abnormality of the bladder
1/20
HP: 0000015
Bladder diverticulum
1/20
HP: 0000020
Urinary incontinence
1/20
HP: 0000032
Abnormality of male external genitalia
1/20
HP: 0000069
Abnormality of the ureter
1/20
HP: 0000071
Ureteral stenosis
2/20
HP: 0000074
Ureteropelvic junction obstruction
1/20
HP: 0000075
Renal duplication
1/20
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000126
Hydronephrosis
1/20
HP: 0000130
Abnormality of the uterus
1/20
HP: 0000137
Abnormality of the ovary
1/20
HP: 0000138
Ovarian cyst
1/20
HP: 0000152
Abnormality of head or neck
1/20
HP: 0000234
Abnormality of the head
1/20
HP: 0000282
Facial edema
1/20
HP: 0000492
Abnormal eyelid morphology
1/20
HP: 0000606
Abnormality of the periorbital region
1/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000796
Urethral obstruction
1/20
HP: 0000811
Abnormal external genitalia
1/20
HP: 0000924
Abnormality of the skeletal system
1/20
HP: 0001194
Abnormalities of placenta or umbilical cord
1/20
HP: 0001197
Abnormality of prenatal development or birth
1/20
HP: 0001376
Limitation of joint mobility
1/20
HP: 0001387
Joint stiffness
1/20
HP: 0001438
Abnormality of abdomen morphology
1/20
HP: 0001626
Abnormality of the cardiovascular system
1/20
HP: 0001760
Abnormality of the foot
1/20
HP: 0001780
Abnormality of toe
1/20
HP: 0001787
Abnormal delivery
1/20
HP: 0001844
Abnormality of the hallux
1/20
HP: 0001999
Abnormal facial shape
1/20
HP: 0002011
Morphological central nervous system abnormality
1/20
HP: 0002597
Abnormality of the vasculature
1/20
HP: 0002664
Neoplasm
1/20
HP: 0002715
Abnormality of the immune system
1/20
HP: 0002813
Abnormality of limb bone morphology
1/20
HP: 0002814
Abnormality of the lower limb
1/20
HP: 0002836
Bladder exstrophy
1/20
HP: 0002862
Bladder carcinoma
1/20
HP: 0002981
Abnormality of the calf
1/20
HP: 0003011
Abnormality of the musculature
1/20
HP: 0003549
Abnormality of connective tissue
1/20
HP: 0004298
Abnormality of the abdominal wall
1/20
HP: 0004320
Vaginal fistula
1/20
HP: 0004321
Bladder fistula
1/20
HP: 0005580
Duplication of renal pelvis
5/20
HP: 0006000
Ureteral obstruction
1/20
HP: 0006493
Aplasia/hypoplasia involving bones of the lower limbs
1/20
HP: 0006740
Transitional cell carcinoma of the bladder
1/20
HP: 0006762
Renal pelvic carcinoma
9/20
HP: 0009115
Aplasia/hypoplasia involving the skeleton
1/20
HP: 0009725
Bladder neoplasm
1/20
HP: 0009792
Teratoma
1/20
HP: 0009815
Aplasia/hypoplasia of the extremities
1/20
HP: 0010461
Abnormality of the male genitalia
1/20
HP: 0010478
Abnormality of the urachus
1/20
HP: 0010511
Long toe
1/20
HP: 0010787
Genital neoplasm
1/20
HP: 0010881
Abnormality of the umbilical cord
1/20
HP: 0010936
Abnormality of the lower urinary tract
1/20
HP: 0010944
Abnormal renal pelvis morphology
1/20
HP: 0010945
Fetal pyelectasis
1/20
HP: 0010946
Dilatation of the renal pelvis
1/20
HP: 0010978
Abnormality of immune system physiology
1/20
HP: 0010992
Stress urinary incontinence
1/20
HP: 0011121
Abnormality of skin morphology
1/20
HP: 0011129
Bilateral fetal pyelectasis
10/20
HP: 0011130
Abnormal renal calyx morphology
9/20
HP: 0011276
Vascular skin abnormality
1/20
HP: 0011297
Abnormal digit morphology
1/20
HP: 0011314
Abnormality of long bone morphology
1/20
HP: 0011354
Generalized abnormality of skin
1/20
HP: 0011355
Localized skin lesion
1/20
HP: 0011410
Caesarian section
1/20
HP: 0011425
Fetal ultrasound soft marker
1/20
HP: 0011442
Abnormal central motor function
1/20
HP: 0011729
Abnormality of joint mobility
1/20
HP: 0011793
Neoplasm by anatomical site
1/20
HP: 0011799
Abnormality of facial soft tissue
1/20
HP: 0011842
Abnormality of skeletal morphology
1/20
HP: 0011844
Abnormal appendicular skeleton morphology
1/20
HP: 0012210
Abnormal renal morphology
1/20
HP: 0012443
Abnormality of brain morphology
1/20
HP: 0012531
Pain
1/20
HP: 0012639
Abnormal nervous system morphology
1/20
HP: 0012786
Recurrent cystitis
1/20
HP: 0025032
Abnormality of digestive system physiology
1/20
HP: 0025142
Constitutional symptom
1/20
HP: 0025360
Polycalycosis
9/20
HP: 0025487
Abnormality of bladder morphology
1/20
HP: 0030654
Umbilical cord cyst
1/20
HP: 0031065
Abnormal ovarian morphology
1/20
HP: 0031105
Abnormal uterus morphology
1/20
HP: 0032171
Bladder pain
1/20
HP: 0040064
Abnormality of limbs
1/20
HP: 0040068
Abnormality of limb bone
1/20
HP: 0040069
Abnormal lower limb bone morphology
1/20
HP: 0041047
Bladder outlet obstruction
1/20
HP: 0045060
Aplasia/hypoplasia involving bones of the extremities
1/20
HP: 0100518
Dysuria
1/20
HP: 0100525
Urachus fistula
1/20
HP: 0100539
Periorbital edema
1/20
HP: 0100548
Exstrophy
1/20
HP: 0100568
Neoplasm of the endocrine system
1/20
HP: 0100634
Neuroendocrine neoplasm
1/20
HP: 0100790
Hernia
1/20
ID
Name
Top Correlation
HP: 0000016
Urinary retention
0/20
HP: 0000036
Abnormality of the penis
0/20
HP: 0000039
Epispadias
0/20
HP: 0000041
Chordee
0/20
HP: 0000072
Hydroureter
0/20
HP: 0000073
Ureteral duplication
0/20
HP: 0000076
Vesicoureteral reflux
0/20
HP: 0000077
Abnormality of the kidney
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000080
Abnormality of reproductive system physiology
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000139
Uterine prolapse
0/20
HP: 0000142
Abnormal vagina morphology
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000315
Abnormality of the orbital region
0/20
HP: 0000464
Abnormality of the neck
0/20
HP: 0000759
Abnormal peripheral nervous system morphology
0/20
HP: 0000790
Hematuria
0/20
HP: 0000795
Abnormality of the urethra
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0000969
Edema
0/20
HP: 0001014
Angiokeratoma
0/20
HP: 0001028
Hemangioma
0/20
HP: 0001048
Cavernous hemangioma
0/20
HP: 0001538
Protuberant abdomen
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001586
Vesicovaginal fistula
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001874
Abnormality of neutrophils
0/20
HP: 0001881
Abnormal leukocyte morphology
0/20
HP: 0001911
Abnormal granulocyte morphology
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002059
Cerebral atrophy
0/20
HP: 0002060
Abnormal cerebral morphology
0/20
HP: 0002120
Cerebral cortical atrophy
0/20
HP: 0002472
Small cerebral cortex
0/20
HP: 0002538
Abnormality of the cerebral cortex
0/20
HP: 0002585
Abnormality of the peritoneum
0/20
HP: 0002668
Paraganglioma
0/20
HP: 0002719
Recurrent infections
0/20
HP: 0002898
Embryonal neoplasm
0/20
HP: 0002977
Aplasia/Hypoplasia involving the central nervous system
0/20
HP: 0002992
Abnormality of tibia morphology
0/20
HP: 0003110
Abnormality of urine homeostasis
0/20
HP: 0003270
Abdominal distention
0/20
HP: 0003394
Muscle spasm
0/20
HP: 0003808
Abnormal muscle tone
0/20
HP: 0004375
Neoplasm of the nervous system
0/20
HP: 0005584
Renal cell carcinoma
0/20
HP: 0005772
Aplasia/Hypoplasia of the tibia
0/20
HP: 0005986
Limitation of neck motion
0/20
HP: 0006426
Rudimentary to absent tibiae
0/20
HP: 0006913
Frontal cortical atrophy
0/20
HP: 0007367
Atrophy/Degeneration affecting the central nervous system
0/20
HP: 0007369
Atrophy/Degeneration affecting the cerebrum
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0008661
Urethral stenosis
0/20
HP: 0008705
Ureteral triplication
0/20
HP: 0008722
Urethral diverticulum
0/20
HP: 0009556
Absent tibia
0/20
HP: 0009726
Renal neoplasm
0/20
HP: 0009817
Aplasia involving bones of the lower limbs
0/20
HP: 0009825
Aplasia involving bones of the extremities
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0010785
Gonadal neoplasm
0/20
HP: 0010786
Urinary tract neoplasm
0/20
HP: 0010935
Abnormality of the upper urinary tract
0/20
HP: 0010974
Abnormal myeloid leukocyte morphology
0/20
HP: 0010987
Abnormal cellular immune system morphology
0/20
HP: 0011032
Abnormality of fluid regulation
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0011398
Central hypotonia
0/20
HP: 0011458
Abdominal symptom
0/20
HP: 0011792
Neoplasm by histology
0/20
HP: 0011804
Abnormal muscle physiology
0/20
HP: 0011843
Abnormality of skeletal physiology
0/20
HP: 0011893
Abnormal leukocyte count
0/20
HP: 0011991
Abnormal neutrophil count
0/20
HP: 0012085
Pyuria
0/20
HP: 0012211
Abnormal renal physiology
0/20
HP: 0012226
Ovarian teratoma
0/20
HP: 0012227
Urethral stricture
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0012337
Abnormal homeostasis
0/20
HP: 0012444
Brain atrophy
0/20
HP: 0012461
Bacteriuria
0/20
HP: 0012587
Macroscopic hematuria
0/20
HP: 0012614
Abnormal urine cytology
0/20
HP: 0012618
Urachal cyst
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012874
Abnormal male reproductive system physiology
0/20
HP: 0012875
Abnormal ejaculation
0/20
HP: 0012877
Retrograde ejaculation
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025238
Foot pain
0/20
HP: 0025245
Cutaneous cyst
0/20
HP: 0025247
Dermoid cyst
0/20
HP: 0025258
Stiff neck
0/20
HP: 0025274
Ovarian dermoid cyst
0/20
HP: 0025633
Abnormal ureter morphology
0/20
HP: 0025634
Abnormal ureter physiology
0/20
HP: 0025635
Ureteral polyp
0/20
HP: 0030157
Flank pain
0/20
HP: 0030669
Abnormal ocular adnexa morphology
0/20
HP: 0030995
Peritoneal effusion
0/20
HP: 0031058
Impairment of activities of daily living
0/20
HP: 0031064
Impaired continence
0/20
HP: 0031261
Bladder polyp
0/20
HP: 0031967
Cloudy urine
0/20
HP: 0032039
Abnormality of the ocular adnexa
0/20
HP: 0032076
Abnormal male urethral meatus morphology
0/20
HP: 0032101
Unusual infection
0/20
HP: 0032251
Abnormal immune system morphology
0/20
HP: 0032309
Abnormal granulocyte count
0/20
HP: 0032435
Neonatal omphalitis
0/20
HP: 0100007
Neoplasm of the peripheral nervous system
0/20
HP: 0100515
Pollakisuria
0/20
HP: 0100516
Neoplasm of the ureter
0/20
HP: 0100540
Palpebral edema
0/20
HP: 0100547
Abnormality of forebrain morphology
0/20
HP: 0100589
Urogenital fistula
0/20
HP: 0100615
Ovarian neoplasm
0/20
HP: 0100627
Displacement of the urethral meatus
0/20
HP: 0100728
Germ cell neoplasia
0/20
HP: 0100742
Vascular neoplasm
0/20
HP: 0100823
Genital hernia
0/20