C78.4

Case	Control
106	460099

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr9:140356449	rs71493670	PNPLA7	G>GC	12	11783	33.2	8.321e-09	4.717
chr10:77018450	rs74656965	-	C>T	14	15710	30.83	2.823e-08	4.112
chr16:12763689	rs117421852	CPPED1	T>C	20	28836	28.78	8.112e-08	3.279
chr10:76879747	rs75933036	SAMD8	A>T	14	16698	28.19	1.101e-07	3.895
chr11:90864459	rs117687213	-	T>A	10	9858	27.64	1.462e-07	4.686
chr4:95484871	rs17021807	PDLIM5	A>G	12	13234	27.55	1.533e-07	4.192
chr10:76761700	rs80105154	KAT6B	C>T	13	15133	27.29	1.749e-07	3.982
chr12:113681915	rs7316638	TPCN1	C>T	15	19387	26.7	2.374e-07	3.638
chr6:30986051	rs9461643	MUC22	G>A	12	13672	26.14	3.179e-07	4.06
chr14:92332650	rs2498850	TC2N	C>T	15	19694	25.59	4.217e-07	3.551
chr12:96001575	rs74424406	-	C>T	19	28696	24.99	5.752e-07	3.12
chr6:31033948	rs73403446	-	G>A	12	14174	24.6	7.068e-07	3.914
chr20:4847486	rs17254239	SLC23A2	C>T	12	14278	24.28	8.33e-07	3.884
chr18:51258999	rs72930106	-	G>A	22	36175	24.21	8.625e-07	2.876
chr4:77422785	rs6847099	SHROOM3	C>T	15	20526	24.03	9.493e-07	3.43
chr8:92588909	rs17731036	-	A>G	21	34012	23.96	9.813e-07	2.92
chr18:72093581	rs116976879	-	C>T	15	20617	23.92	1.002e-06	3.422
chr8:73185770	rs117069084	-	C>G	14	18486	23.58	1.199e-06	3.516
chr8:74199045	rs72657769	-	G>C	12	14718	23.2	1.463e-06	3.783
chr2:25011635	rs115082836	-	G>T	10	10951	23.14	1.504e-06	4.188
chr9:140356449	rs71493670	PNPLA7	G>GC	12	11643	32.69	1.082e-08	4.677
chr23:47705674	rs183846665	ZNF81	C>T	14	14779	32.32	1.308e-08	4.293
chr7:80669657	rs73145507	-	A>G	11	10133	31.9	1.621e-08	4.86
chr10:77018450	rs74656965	-	C>T	14	15362	30.88	2.742e-08	4.123
chr16:12763689	rs117421852	CPPED1	T>C	20	28019	29.18	6.6e-08	3.31
chr11:90864459	rs117687213	-	T>A	10	9417	28.69	8.486e-08	4.808
chr6:30986051	rs9461643	MUC22	G>A	12	12774	28.21	1.089e-07	4.259
chr10:76879747	rs75933036	SAMD8	A>T	14	16407	27.98	1.225e-07	3.884
chr12:113681915	rs7316638	TPCN1	C>T	15	18732	27.33	1.718e-07	3.693
chr4:95484871	rs17021807	PDLIM5	A>G	12	13027	27.27	1.768e-07	4.171
chr10:76761700	rs80105154	KAT6B	C>T	13	14854	27.14	1.888e-07	3.975
chr6:31033948	rs73403446	-	G>A	12	13385	26.12	3.214e-07	4.063
chr6:30994483	rs9468859	MUC22	G>A	11	11995	24.42	7.763e-07	4.099
chr6:31001355	rs9468862	MUC22	G>A	11	11982	24.4	7.821e-07	4.1
chr7:18700375	rs73069011	HDAC9	C>G	32	62476	24.19	8.75e-07	2.498
chr3:99032139	rs1383840	-	A>G	8	7234	24.13	9.023e-07	4.935
chr8:73185770	rs117069084	-	C>G	14	18116	23.51	1.243e-06	3.515
chr6:31134482	rs73401031	TCF19	C>A	12	14343	23.21	1.454e-06	3.788
chr6:31149310	rs73401062	-	A>G	12	14339	23.18	1.473e-06	3.785
chr2:25011635	rs115082836	-	G>T	10	10759	22.98	1.635e-06	4.175

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds Ratio

chr9:140356449

rs71493670

PNPLA7

G>GC

12

11783

33.2

8.321e-09

4.717

chr10:77018450

rs74656965

-

C>T

14

15710

30.83

2.823e-08

4.112

chr16:12763689

rs117421852

CPPED1

T>C

20

28836

28.78

8.112e-08

3.279

chr10:76879747

rs75933036

SAMD8

A>T

14

16698

28.19

1.101e-07

3.895

chr11:90864459

rs117687213

-

T>A

10

9858

27.64

1.462e-07

4.686

chr4:95484871

rs17021807

PDLIM5

A>G

12

13234

27.55

1.533e-07

4.192

chr10:76761700

rs80105154

KAT6B

C>T

13

15133

27.29

1.749e-07

3.982

chr12:113681915

rs7316638

TPCN1

C>T

15

19387

26.7

2.374e-07

3.638

chr6:30986051

rs9461643

MUC22

G>A

12

13672

26.14

3.179e-07

4.06

chr14:92332650

rs2498850

TC2N

C>T

15

19694

25.59

4.217e-07

3.551

chr12:96001575

rs74424406

-

C>T

19

28696

24.99

5.752e-07

3.12

chr6:31033948

rs73403446

-

G>A

12

14174

24.6

7.068e-07

3.914

chr20:4847486

rs17254239

SLC23A2

C>T

12

14278

24.28

8.33e-07

3.884

chr18:51258999

rs72930106

-

G>A

22

36175

24.21

8.625e-07

2.876

chr4:77422785

rs6847099

SHROOM3

C>T

15

20526

24.03

9.493e-07

3.43

chr8:92588909

rs17731036

-

A>G

21

34012

23.96

9.813e-07

2.92

chr18:72093581

rs116976879

-

C>T

15

20617

23.92

1.002e-06

3.422

chr8:73185770

rs117069084

-

C>G

14

18486

23.58

1.199e-06

3.516

chr8:74199045

rs72657769

-

G>C

12

14718

23.2

1.463e-06

3.783

chr2:25011635

rs115082836

-

G>T

10

10951

23.14

1.504e-06

4.188

chr9:140356449

rs71493670

PNPLA7

G>GC

12

11643

32.69

1.082e-08

4.677

chr23:47705674

rs183846665

ZNF81

C>T

14

14779

32.32

1.308e-08

4.293

chr7:80669657

rs73145507

-

A>G

11

10133

31.9

1.621e-08

4.86

chr10:77018450

rs74656965

-

C>T

14

15362

30.88

2.742e-08

4.123

chr16:12763689

rs117421852

CPPED1

T>C

20

28019

29.18

6.6e-08

3.31

chr11:90864459

rs117687213

-

T>A

10

9417

28.69

8.486e-08

4.808

chr6:30986051

rs9461643

MUC22

G>A

12

12774

28.21

1.089e-07

4.259

chr10:76879747

rs75933036

SAMD8

A>T

14

16407

27.98

1.225e-07

3.884

chr12:113681915

rs7316638

TPCN1

C>T

15

18732

27.33

1.718e-07

3.693

chr4:95484871

rs17021807

PDLIM5

A>G

12

13027

27.27

1.768e-07

4.171

chr10:76761700

rs80105154

KAT6B

C>T

13

14854

27.14

1.888e-07

3.975

chr6:31033948

rs73403446

-

G>A

12

13385

26.12

3.214e-07

4.063

chr6:30994483

rs9468859

MUC22

G>A

11

11995

24.42

7.763e-07

4.099

chr6:31001355

rs9468862

MUC22

G>A

11

11982

24.4

7.821e-07

4.1

chr7:18700375

rs73069011

HDAC9

C>G

32

62476

24.19

8.75e-07

2.498

chr3:99032139

rs1383840

-

A>G

8

7234

24.13

9.023e-07

4.935

chr8:73185770

rs117069084

-

C>G

14

18116

23.51

1.243e-06

3.515

chr6:31134482

rs73401031

TCF19

C>A

12

14343

23.21

1.454e-06

3.788

chr6:31149310

rs73401062

-

A>G

12

14339

23.18

1.473e-06

3.785

chr2:25011635

rs115082836

-

G>T

10

10759

22.98

1.635e-06

4.175

ID	Name	Top Correlation
HP: 0000077	Abnormality of the kidney	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000152	Abnormality of head or neck	0/20
HP: 0000234	Abnormality of the head	0/20
HP: 0000271	Abnormality of the face	0/20
HP: 0000478	Abnormality of the eye	0/20
HP: 0000504	Abnormality of vision	0/20
HP: 0000651	Diplopia	0/20
HP: 0000707	Abnormality of the nervous system	0/20
HP: 0000759	Abnormal peripheral nervous system morphology	0/20
HP: 0000790	Hematuria	0/20
HP: 0000951	Abnormality of the skin	0/20
HP: 0001574	Abnormality of the integument	0/20
HP: 0001939	Abnormality of metabolism/homeostasis	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002862	Bladder carcinoma	0/20
HP: 0003110	Abnormality of urine homeostasis	0/20
HP: 0004375	Neoplasm of the nervous system	0/20
HP: 0006740	Transitional cell carcinoma of the bladder	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0007379	Neoplasm of the genitourinary tract	0/20
HP: 0009725	Bladder neoplasm	0/20
HP: 0010786	Urinary tract neoplasm	0/20
HP: 0010935	Abnormality of the upper urinary tract	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011121	Abnormality of skin morphology	0/20
HP: 0011124	Abnormality of epidermal morphology	0/20
HP: 0011277	Abnormality of the urinary system physiology	0/20
HP: 0011514	Abnormality of binocular vision	0/20
HP: 0011792	Neoplasm by histology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012211	Abnormal renal physiology	0/20
HP: 0012373	Abnormal eye physiology	0/20
HP: 0012587	Macroscopic hematuria	0/20
HP: 0012614	Abnormal urine cytology	0/20
HP: 0012639	Abnormal nervous system morphology	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0030448	Soft tissue sarcoma	0/20
HP: 0100007	Neoplasm of the peripheral nervous system	0/20
HP: 0100242	Sarcoma	0/20
HP: 0100568	Neoplasm of the endocrine system	0/20
HP: 0100570	Carcinoid tumor	0/20
HP: 0100634	Neuroendocrine neoplasm	0/20
HP: 0100792	Acantholysis	0/20
HP: 0100833	Neoplasm of the small intestine	0/20
HP: 0200058	Angiosarcoma	0/20

Secondary malignant neoplasm of small intestine

C78.4

Case/Control GWAS ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Secondary malignant neoplasm of small intestine

C78.4

Case/Control GWAS ⓘ

Links

Statistics

Top SNP Information Show Table

Associated Phenotypes ⓘ Shared SNP phenotypes No shared SNP phenotypes

Case/Control GWAS ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ