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ICD-10
HPO
Compare GWAS

Super Class
Carcinoma in situ of other and unspecified sites
Sub Class

Bladder

D09.0

Case/Control GWAS ^ⓘ

GWAS of D090

Links

Interactive Plot

Statistics

Case	Control
270	459935

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr1:21573855	rs1076669	ECE1	G>A	77	76313	27.39	1.662e-07	1.887
chr2:218027973	rs11688097	-	T>A	25	16338	27.34	1.706e-07	2.79
chr18:56480954	rs117188786	-	A>C	25	16955	25.13	5.361e-07	2.681
chr11:121076460	rs77165793	-	T>C	27	19314	24.06	9.324e-07	2.545
chr19:29588133	rs10416902	-	C>T	18	10831	24.0	9.631e-07	3.056
chr8:8220362	rs2979234	PRAG1	G>T	79	84625	23.84	1.048e-06	1.798
chr5:119830107	rs9647588	PRR16	T>C	43	37340	23.6	1.187e-06	2.126
chr11:9638010	rs117238460	-	C>A	31	23923	23.03	1.599e-06	2.365
chr18:19169791	rs117161115	ESCO1	G>A	24	16661	22.92	1.69e-06	2.618
chr21:38493669	rs12329774	TTC3	A>G	33	26276	22.75	1.846e-06	2.299
chr9:95233248	rs1175605	CENPP	T>C	29	22245	21.82	2.988e-06	2.374
chr9:30553527	rs117470507	-	T>C	22	15042	21.66	3.261e-06	2.649
chr10:125368117	rs7079376	-	G>A	155	366208	21.41	3.712e-06	0.6473
chr1:17249546	rs61461842	CROCC	C>T	51	48404	21.32	3.892e-06	1.948
chr11:44674461	rs71490075	-	G>A	94	107016	21.27	3.981e-06	1.677
chr1:17249542	rs59842660	CROCC	C>T	51	48660	21.26	4.016e-06	1.946
chr6:64444337	rs13217694	PHF3	G>A	81	88211	21.25	4.032e-06	1.73
chr9:95132690	rs1746787	CENPP	A>G	30	23692	20.99	4.606e-06	2.308
chr12:57930310	rs79512872	DCTN2	G>A	41	36714	20.9	4.851e-06	2.068
chr18:19323348	rs79533980	MIB1	C>T	21	14373	20.81	5.065e-06	2.656

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation

ID	Name	Top Correlation
HP: 0000009	Functional abnormality of the bladder	0/20
HP: 0000011	Neurogenic bladder	0/20
HP: 0000012	Urinary urgency	0/20
HP: 0000014	Abnormality of the bladder	0/20
HP: 0000015	Bladder diverticulum	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002836	Bladder exstrophy	0/20
HP: 0002862	Bladder carcinoma	0/20
HP: 0004298	Abnormality of the abdominal wall	0/20
HP: 0006740	Transitional cell carcinoma of the bladder	0/20
HP: 0007379	Neoplasm of the genitourinary tract	0/20
HP: 0009725	Bladder neoplasm	0/20
HP: 0010786	Urinary tract neoplasm	0/20
HP: 0010936	Abnormality of the lower urinary tract	0/20
HP: 0011277	Abnormality of the urinary system physiology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025487	Abnormality of bladder morphology	0/20
HP: 0100548	Exstrophy	0/20