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ICD-10
HPO
Compare GWAS
Super Class
Benign neoplasms
Sub Class
Caecum
Ascending colon
Transverse colon
Descending colon
Sigmoid colon
Colon, unspecified
Rectosigmoid junction
Rectum
Anus and anal canal
Benign neoplasm of colon, rectum, anus and anal canal
D12
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
18112
442082
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr18:46453463
rs4939827
SMAD7
T>C
17111
459007
189.1
5.119e-43
0.8649
chr5:33951693
rs16891982
SLC45A2
G>C
2044
65017
130.2
3.722e-30
0.7688
chr15:48426484
rs1426654
SLC24A5
A>G
717
26809
121.5
2.98e-28
0.6583
chr11:111125512
rs2001754
C11orf53
A>G
13435
309223
115.5
6.041e-27
1.125
chr5:33958959
rs28777
SLC45A2
A>C
1729
55266
113.3
1.886e-26
0.7669
chr11:111171709
rs3802842
COLCA2
A>C
12277
281429
110.0
9.878e-26
1.125
chr1:159174683
rs2814778
ACKR1
T>C
471
18906
109.7
1.114e-25
0.6145
chr11:111165009
rs7103178
-
T>C
12313
282579
107.1
4.338e-25
1.123
chr15:48392165
rs1834640
-
A>G
886
30738
99.87
1.63e-23
0.7096
chr2:226686177
rs7581591
-
T>C
505
19330
94.99
1.917e-22
0.6448
chr8:145639681
rs1871534
SLC39A4
G>C
454
17691
92.9
5.501e-22
0.6332
chr8:10557760
rs57041981
RP1L1
A>G
416
16232
85.37
2.473e-20
0.6329
chr16:29035406
rs74014848
-
A>G
576
20905
83.16
7.56e-20
0.6799
chr2:163216109
rs3213843
GCA
C>T
278
11874
82.96
8.356e-20
0.5782
chr15:33022090
rs35330276
GREM1
G>A
7731
174760
81.97
1.382e-19
1.125
chr9:117110112
Affx-52344420
AKNA
T>TG
355
14224
81.66
1.613e-19
0.6168
chr15:45491394
rs1648299
SHF
T>C
438
16721
81.17
2.072e-19
0.6471
chr17:58508582
rs8071181
C17orf64
G>A
383
15034
80.59
2.772e-19
0.6295
chr1:207782889
rs17047661
CR1
A>G
350
13969
79.16
5.716e-19
0.6193
chr16:28954860
rs7203982
-
T>C
848
28534
78.56
7.741e-19
0.7326
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000014
Abnormality of the bladder
7/20
HP: 0000078
Abnormality of the genital system
1/20
HP: 0000079
Abnormality of the urinary system
2/20
HP: 0000118
Phenotypic abnormality
3/20
HP: 0000119
Abnormality of the genitourinary system
2/20
HP: 0000152
Abnormality of head or neck
2/20
HP: 0000234
Abnormality of the head
2/20
HP: 0000356
Abnormality of the outer ear
7/20
HP: 0000363
Abnormality of earlobe
7/20
HP: 0000377
Abnormality of the pinna
7/20
HP: 0000387
Absent earlobe
12/20
HP: 0000502
Abnormal conjunctiva morphology
3/20
HP: 0000598
Abnormality of the ear
6/20
HP: 0000632
Lacrimation abnormality
3/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000775
Abnormality of the diaphragm
9/20
HP: 0000776
Congenital diaphragmatic hernia
9/20
HP: 0000924
Abnormality of the skeletal system
2/20
HP: 0001626
Abnormality of the cardiovascular system
1/20
HP: 0001892
Abnormal bleeding
2/20
HP: 0002013
Vomiting
5/20
HP: 0002014
Diarrhea
11/20
HP: 0002017
Nausea and vomiting
5/20
HP: 0002034
Abnormality of the rectum
9/20
HP: 0002035
Rectal prolapse
6/20
HP: 0002037
Inflammation of the large intestine
1/20
HP: 0002086
Abnormality of the respiratory system
2/20
HP: 0002088
Abnormal lung morphology
2/20
HP: 0002239
Gastrointestinal hemorrhage
11/20
HP: 0002242
Abnormal intestine morphology
4/20
HP: 0002250
Abnormal large intestine morphology
8/20
HP: 0002253
Colonic diverticula
6/20
HP: 0002566
Intestinal malrotation
2/20
HP: 0002573
Hematochezia
11/20
HP: 0002580
Volvulus
13/20
HP: 0002589
Gastrointestinal atresia
4/20
HP: 0002597
Abnormality of the vasculature
1/20
HP: 0002607
Bowel incontinence
5/20
HP: 0002664
Neoplasm
3/20
HP: 0002672
Gastrointestinal carcinoma
6/20
HP: 0002715
Abnormality of the immune system
1/20
HP: 0002733
Abnormality of the lymph nodes
1/20
HP: 0002860
Squamous cell carcinoma
6/20
HP: 0002898
Embryonal neoplasm
5/20
HP: 0003003
Colon cancer
11/20
HP: 0003011
Abnormality of the musculature
1/20
HP: 0003422
Vertebral segmentation defect
4/20
HP: 0003549
Abnormality of connective tissue
7/20
HP: 0004298
Abnormality of the abdominal wall
4/20
HP: 0004299
Hernia of the abdominal wall
4/20
HP: 0004321
Bladder fistula
9/20
HP: 0004386
Gastrointestinal inflammation
4/20
HP: 0004797
Multiple small bowel atresias
4/20
HP: 0005211
Midgut malrotation
2/20
HP: 0005222
Bowel diverticulosis
6/20
HP: 0005223
Duplicated colon
4/20
HP: 0005245
Intestinal hypoplasia
3/20
HP: 0006749
Malignant gastrointestinal tract tumors
6/20
HP: 0007378
Neoplasm of the gastrointestinal tract
7/20
HP: 0007379
Neoplasm of the genitourinary tract
3/20
HP: 0008069
Neoplasm of the skin
2/20
HP: 0008490
Sacral segmentation defect
1/20
HP: 0009131
Abnormality of the musculature of the thorax
9/20
HP: 0009792
Teratoma
4/20
HP: 0009906
Aplasia/Hypoplasia of the earlobes
12/20
HP: 0010447
Anal fistula
2/20
HP: 0010448
Colonic atresia
4/20
HP: 0010478
Abnormality of the urachus
13/20
HP: 0010787
Genital neoplasm
6/20
HP: 0010866
Abdominal wall defect
4/20
HP: 0010936
Abnormality of the lower urinary tract
7/20
HP: 0010978
Abnormality of immune system physiology
2/20
HP: 0011024
Abnormality of the gastrointestinal tract
5/20
HP: 0011028
Abnormality of blood circulation
4/20
HP: 0011029
Internal hemorrhage
4/20
HP: 0011100
Intestinal atresia
4/20
HP: 0011121
Abnormality of skin morphology
4/20
HP: 0011140
Gastrointestinal duplication
4/20
HP: 0011276
Vascular skin abnormality
4/20
HP: 0011354
Generalized abnormality of skin
1/20
HP: 0011792
Neoplasm by histology
1/20
HP: 0011793
Neoplasm by anatomical site
3/20
HP: 0011805
Abnormal skeletal muscle morphology
2/20
HP: 0011842
Abnormality of skeletal morphology
2/20
HP: 0011951
Aspiration pneumonia
1/20
HP: 0011952
Acute aspiration pneumonia
3/20
HP: 0012252
Abnormal respiratory system morphology
2/20
HP: 0012425
Stercoral ulcer
12/20
HP: 0012531
Pain
1/20
HP: 0012550
Colonic varices
5/20
HP: 0012639
Abnormal nervous system morphology
1/20
HP: 0012647
Abnormal inflammatory response
2/20
HP: 0012649
Increased inflammatory response
2/20
HP: 0012702
Tenesmus
8/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
3/20
HP: 0012719
Functional abnormality of the gastrointestinal tract
5/20
HP: 0012732
Anorectal anomaly
8/20
HP: 0012851
Colonic stenosis
8/20
HP: 0025032
Abnormality of digestive system physiology
1/20
HP: 0025085
Bloody diarrhea
11/20
HP: 0025142
Constitutional symptom
2/20
HP: 0025194
Morgagni diaphragmatic hernia
4/20
HP: 0025487
Abnormality of bladder morphology
8/20
HP: 0030947
Conjunctival follicles
2/20
HP: 0031368
Intestinal perforation
14/20
HP: 0031369
Colon perforation
12/20
HP: 0031371
Rectal perforation
7/20
HP: 0031492
Epithelial neoplasm
3/20
HP: 0031493
Glandular cell neoplasm
3/20
HP: 0031495
Mucinous neoplasm
3/20
HP: 0031499
Appendiceal mucinous neoplasm
2/20
HP: 0031703
Abnormal ear morphology
5/20
HP: 0031813
Colonic eosinophilia
7/20
HP: 0031828
Abnormal superficial reflex
2/20
HP: 0032064
Gastrointestinal eosinophilia
2/20
HP: 0032551
Hemorrhoids
8/20
HP: 0040273
Adenocarcinoma of the intestines
5/20
HP: 0040275
Adenocarcinoma of the large intestine
9/20
HP: 0040276
Adenocarcinoma of the colon
13/20
HP: 0100022
Abnormality of movement
2/20
HP: 0100273
Neoplasm of the colon
10/20
HP: 0100274
Gustatory lacrimation
4/20
HP: 0100525
Urachus fistula
13/20
HP: 0100541
Femoral hernia
6/20
HP: 0100568
Neoplasm of the endocrine system
6/20
HP: 0100570
Carcinoid tumor
3/20
HP: 0100589
Urogenital fistula
5/20
HP: 0100590
Rectal fistula
3/20
HP: 0100634
Neuroendocrine neoplasm
3/20
HP: 0100668
Intestinal duplication
4/20
HP: 0100728
Germ cell neoplasia
2/20
HP: 0100790
Hernia
8/20
HP: 0100811
Aplasia/Hypoplasia of the colon
2/20
HP: 0100819
Intestinal fistula
1/20
HP: 0100834
Neoplasm of the large intestine
8/20
HP: 0500005
Anal pain
3/20
HP: 0500027
Aplastic colon
3/20
HP: 0500039
Conjunctival cicatrization
1/20
HP: 0500040
Dermolipoma of the conjunctiva
3/20
ID
Name
Top Correlation
HP: 0000271
Abnormality of the face
0/20
HP: 0000315
Abnormality of the orbital region
0/20
HP: 0000478
Abnormality of the eye
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000759
Abnormal peripheral nervous system morphology
0/20
HP: 0000925
Abnormality of the vertebral column
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001933
Subcutaneous hemorrhage
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002019
Constipation
0/20
HP: 0002090
Pneumonia
0/20
HP: 0002270
Abnormality of the autonomic nervous system
0/20
HP: 0002576
Intussusception
0/20
HP: 0003468
Abnormal vertebral morphology
0/20
HP: 0004362
Abnormality of enteric ganglion morphology
0/20
HP: 0004375
Neoplasm of the nervous system
0/20
HP: 0004378
Abnormality of the anus
0/20
HP: 0004785
Malrotation of colon
0/20
HP: 0005107
Abnormal sacrum morphology
0/20
HP: 0007420
Spontaneous hematomas
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0009790
Hemisacrum
0/20
HP: 0009793
Presacral teratoma
0/20
HP: 0010785
Gonadal neoplasm
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011458
Abdominal symptom
0/20
HP: 0011947
Respiratory tract infection
0/20
HP: 0012331
Abnormal autonomic nervous system morphology
0/20
HP: 0012373
Abnormal eye physiology
0/20
HP: 0012450
Chronic constipation
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012700
Abnormal large intestine physiology
0/20
HP: 0025028
Abnormality of enteric nervous system morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025042
Abnormality of mesenteric lymph nodes
0/20
HP: 0025043
Enlarged mesenteric lymph node
0/20
HP: 0025086
Bloody mucoid diarrhea
0/20
HP: 0025089
Feculent vomiting
0/20
HP: 0025150
Hypoganglionosis
0/20
HP: 0030669
Abnormal ocular adnexa morphology
0/20
HP: 0030736
Sacrococcygeal teratoma
0/20
HP: 0031058
Impairment of activities of daily living
0/20
HP: 0031064
Impaired continence
0/20
HP: 0031494
Ovarian mucinous tumor
0/20
HP: 0031826
Abnormal reflex
0/20
HP: 0031829
Absent cremaster reflex
0/20
HP: 0031910
Abnormal cranial nerve physiology
0/20
HP: 0032039
Abnormality of the ocular adnexa
0/20
HP: 0100007
Neoplasm of the peripheral nervous system
0/20
HP: 0100763
Abnormality of the lymphatic system
0/20
HP: 0410008
Abnormality of the peripheral nervous system
0/20