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ICD-10
HPO
Compare GWAS
Super Class
Benign neoplasm of colon, rectum, anus and anal canal
Sub Class
Ascending colon
D12.2
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2910
457295
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr18:46453463
rs4939827
SMAD7
T>C
2744
473373
37.36
9.835e-10
0.8541
chr12:51171090
rs12372718
ATF1
A>G
2667
387493
33.38
7.568e-09
1.161
chr12:51213765
rs11169571
ATF1
T>C
2675
388216
33.3
7.914e-09
1.161
chr12:51203371
rs1129406
ATF1
C>T
2689
391905
31.49
2.005e-08
1.156
chr12:51138862
rs1047912
DIP2B
C>T
1998
285122
30.69
3.027e-08
1.163
chr11:111125512
rs2001754
C11orf53
A>G
2227
320431
30.25
3.79e-08
1.158
chr11:111165009
rs7103178
-
T>C
2045
292847
30.25
3.801e-08
1.161
chr12:51032415
rs12818741
DIP2B
A>G
2367
341858
30.18
3.943e-08
1.156
chr20:6404281
rs961253
-
C>A
2373
343185
30.05
4.22e-08
1.155
chr1:10752990
rs60449700
CASZ1
A>G
333
39760
27.76
1.374e-07
1.346
chr11:111171709
rs3802842
COLCA2
A>C
2031
291675
27.65
1.457e-07
1.154
chr12:50934931
rs11169484
DIP2B
G>A
2342
340765
26.94
2.103e-07
1.147
chr3:41010253
rs13067838
-
G>A
1169
161379
25.72
3.942e-07
1.181
chr20:6377965
rs432266
-
C>T
2135
309587
25.18
5.228e-07
1.145
chr19:46262286
rs725660
BHMG1
C>A
2384
348678
24.4
7.832e-07
1.139
chr8:128413305
rs6983267
POU5F1B
G>T
2711
460392
24.37
7.95e-07
0.8804
chr18:46370055
rs4939820
CTIF
T>G
1046
143955
24.27
8.384e-07
1.183
chr12:50707448
rs35209607
-
C>T
2317
338331
23.72
1.113e-06
1.137
chr1:8487327
rs115846081
RERE
T>C
334
40718
23.67
1.145e-06
1.315
chr1:22698447
rs7524102
-
A>G
956
174683
23.61
1.182e-06
0.8425
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0002566
Intestinal malrotation
2/20
HP: 0002589
Gastrointestinal atresia
9/20
HP: 0005211
Midgut malrotation
3/20
HP: 0005245
Intestinal hypoplasia
9/20
HP: 0010448
Colonic atresia
15/20
HP: 0011100
Intestinal atresia
11/20
HP: 0012550
Colonic varices
10/20
HP: 0012851
Colonic stenosis
11/20
HP: 0030947
Conjunctival follicles
9/20
HP: 0100273
Neoplasm of the colon
1/20
HP: 0100811
Aplasia/Hypoplasia of the colon
9/20
HP: 0100834
Neoplasm of the large intestine
1/20
HP: 0500027
Aplastic colon
9/20
HP: 0500039
Conjunctival cicatrization
10/20
HP: 0500040
Dermolipoma of the conjunctiva
14/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000315
Abnormality of the orbital region
0/20
HP: 0000502
Abnormal conjunctiva morphology
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002242
Abnormal intestine morphology
0/20
HP: 0002250
Abnormal large intestine morphology
0/20
HP: 0002664
Neoplasm
0/20
HP: 0007378
Neoplasm of the gastrointestinal tract
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0030669
Abnormal ocular adnexa morphology
0/20
HP: 0032039
Abnormality of the ocular adnexa
0/20