Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Benign neoplasm of colon, rectum, anus and anal canal
Sub Class
Ascending colon
D12.2
Female
ⓘ
Male
ⓘ
Links
Ignore Sex
Interactive Plot
Statistics
Female Case
Female Control
% Female
1128
248735
39%
Male Case
Male Control
% Male
1782
208560
61%
Top SNP Information
Show Female
Show Male
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr4:175147257
rs72702217
-
A>G
776
197983
28.28
1.048e-07
0.7928
chr18:25519546
rs17445468
-
G>A
108
14762
25.07
5.534e-07
1.632
chr20:6404281
rs961253
-
C>A
968
186436
24.98
5.789e-07
1.231
chr5:3374292
rs59875812
-
C>T
1032
252582
24.1
9.127e-07
0.8166
chr18:3964446
rs75321103
DLGAP1
T>C
99
13476
23.61
1.179e-06
1.641
chr13:56171847
rs9527422
-
G>A
236
38382
22.65
1.948e-06
1.385
chr9:7240833
rs147258246
-
G>A
83
11059
22.62
1.978e-06
1.696
chr18:7327773
rs28493149
-
G>C
87
11679
21.79
3.039e-06
1.659
chr10:101895028
rs79997218
-
G>A
97
13366
21.79
3.046e-06
1.618
chr7:151045323
rs79560277
NUB1
A>G
161
24818
20.88
4.885e-06
1.451
chr6:105128534
rs4946639
-
T>C
672
126695
20.38
6.34e-06
1.228
chr6:105070290
rs12524558
-
A>C
517
94661
19.87
8.268e-06
1.248
chr2:122977330
rs1344758
-
T>C
822
159234
19.46
1.03e-05
1.211
chr11:111165009
rs7103178
-
T>C
827
159759
19.24
1.156e-05
1.208
chr5:142046183
rs67197778
FGF1
G>T
573
106556
18.98
1.318e-05
1.235
chr2:4749593
rs114242922
-
A>G
62
7890
18.96
1.336e-05
1.742
chr5:40257771
rs168403
-
T>C
1252
250790
18.82
1.436e-05
1.194
chr17:6532559
rs77343957
KIAA0753
A>C
175
27916
18.64
1.578e-05
1.403
chr7:51693636
rs76318498
-
G>T
65
8419
18.58
1.629e-05
1.712
chr2:40340954
rs5547
SLC8A1
C>G
98
14044
18.4
1.791e-05
1.553
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr18:46453463
rs4939827
SMAD7
T>C
1606
216553
46.75
8.063e-12
0.7967
chr4:41262075
rs116549015
UCHL1
G>A
113
8333
26.66
2.426e-07
1.635
chr11:74345550
rs3824999
POLD3
T>G
1982
217877
24.91
6.021e-07
1.179
chr1:45917282
rs79755654
AL451136.1
C>T
101
7417
24.09
9.199e-07
1.638
chr11:74335769
rs10899020
POLD3
A>G
1977
217692
23.87
1.031e-06
1.175
chr2:207878285
rs78885878
-
G>A
108
8212
22.29
2.343e-06
1.584
chr7:99245080
rs4646457
-
A>C
273
42670
22.2
2.452e-06
0.7437
chr5:92431993
rs72782694
-
C>A
74
5132
22.12
2.56e-06
1.732
chr1:45110557
rs41269055
RNF220
C>T
81
5764
21.97
2.767e-06
1.689
chr20:55991823
rs6014994
-
C>A
558
55248
21.83
2.972e-06
1.24
chr1:97968615
rs2786782
DPYD
G>A
1326
174279
21.8
3.022e-06
0.8518
chr1:22698447
rs7524102
-
A>G
560
79811
21.79
3.045e-06
0.807
chr1:22711473
rs6426749
-
G>C
561
79716
21.41
3.702e-06
0.8086
chr5:115535263
rs114842260
COMMD10
G>T
175
14775
21.0
4.589e-06
1.426
chr8:72568732
rs2911753
-
C>T
1545
200273
20.55
5.808e-06
0.8595
chr20:49979579
rs73127103
-
C>T
118
9331
20.39
6.307e-06
1.525
chr15:45388382
rs2554451
DUOX2
T>C
250
39116
20.3
6.621e-06
0.7446
chr7:99270539
rs776746
CYP3A5
C>T
242
37980
20.11
7.322e-06
0.7423
chr7:99245914
rs15524
CYP3A5
A>G
268
41441
20.05
7.53e-06
0.7528
chr8:128424792
rs7014346
POU5F1B
G>A
1517
164940
19.99
7.799e-06
1.162
Associated Phenotypes
ⓘ
Shared SNP phenotype
No shared SNP phenotype
ID
Name
Top Correlation
HP: 0002566
Intestinal malrotation
2/20
HP: 0002589
Gastrointestinal atresia
9/20
HP: 0005211
Midgut malrotation
3/20
HP: 0005245
Intestinal hypoplasia
9/20
HP: 0010448
Colonic atresia
15/20
HP: 0011100
Intestinal atresia
11/20
HP: 0012550
Colonic varices
10/20
HP: 0012851
Colonic stenosis
11/20
HP: 0030947
Conjunctival follicles
9/20
HP: 0100273
Neoplasm of the colon
1/20
HP: 0100811
Aplasia/Hypoplasia of the colon
9/20
HP: 0100834
Neoplasm of the large intestine
1/20
HP: 0500027
Aplastic colon
9/20
HP: 0500039
Conjunctival cicatrization
10/20
HP: 0500040
Dermolipoma of the conjunctiva
14/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000315
Abnormality of the orbital region
0/20
HP: 0000502
Abnormal conjunctiva morphology
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002242
Abnormal intestine morphology
0/20
HP: 0002250
Abnormal large intestine morphology
0/20
HP: 0002664
Neoplasm
0/20
HP: 0007378
Neoplasm of the gastrointestinal tract
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0030669
Abnormal ocular adnexa morphology
0/20
HP: 0032039
Abnormality of the ocular adnexa
0/20