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ICD-10
HPO
Compare GWAS
Super Class
Benign neoplasm of colon, rectum, anus and anal canal
Sub Class
Transverse colon
D12.3
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
3803
456402
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr18:46453463
rs4939827
SMAD7
T>C
3546
472571
71.23
3.18e-17
0.8267
chr11:111165009
rs7103178
-
T>C
2671
292221
35.26
2.891e-09
1.152
chr1:22698447
rs7524102
-
A>G
1246
174393
34.52
4.217e-09
0.834
chr11:111171709
rs3802842
COLCA2
A>C
2656
291050
34.02
5.457e-09
1.149
chr8:128413305
rs6983267
POU5F1B
G>T
3556
459547
33.33
7.774e-09
0.878
chr11:111125512
rs2001754
C11orf53
A>G
2889
319769
30.74
2.949e-08
1.138
chr1:22711473
rs6426749
-
G>C
1253
174144
30.56
3.232e-08
0.8433
chr8:128407443
rs10505477
POU5F1B
A>G
3655
469496
29.39
5.918e-08
0.8852
chr12:51171090
rs12372718
ATF1
A>G
3446
386714
28.22
1.081e-07
1.128
chr12:51213765
rs11169571
ATF1
T>C
3447
387444
27.88
1.29e-07
1.127
chr12:50906405
rs10876044
DIP2B
T>C
2694
351846
27.3
1.739e-07
0.8834
chr18:46400784
rs75518588
-
G>A
1796
193954
26.86
2.188e-07
1.15
chr12:51203371
rs1129406
ATF1
C>T
3476
391118
26.56
2.559e-07
1.124
chr18:46453754
rs35352860
SMAD7
C>T
1903
253472
25.75
3.892e-07
0.8749
chr15:67026861
rs2439385
SMAD6
G>T
2040
270553
25.73
3.919e-07
0.8776
chr12:50901882
rs10876041
DIP2B
C>T
2661
346103
25.65
4.088e-07
0.8864
chr18:46387889
rs3809921
CTIF
G>A
3512
450629
25.43
4.597e-07
0.8923
chr1:22702858
rs6696981
-
G>T
837
118848
25.27
4.976e-07
0.8319
chr12:51207704
rs829112
ATF1
A>G
2261
296456
24.24
8.507e-07
0.8846
chr12:51138862
rs1047912
DIP2B
C>T
2564
284556
24.18
8.768e-07
1.125
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000632
Lacrimation abnormality
10/20
HP: 0002580
Volvulus
4/20
HP: 0002589
Gastrointestinal atresia
8/20
HP: 0005223
Duplicated colon
8/20
HP: 0010448
Colonic atresia
13/20
HP: 0011100
Intestinal atresia
12/20
HP: 0011140
Gastrointestinal duplication
8/20
HP: 0012851
Colonic stenosis
11/20
HP: 0025194
Morgagni diaphragmatic hernia
16/20
HP: 0031368
Intestinal perforation
4/20
HP: 0031369
Colon perforation
4/20
HP: 0100274
Gustatory lacrimation
16/20
HP: 0100668
Intestinal duplication
8/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000478
Abnormality of the eye
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000775
Abnormality of the diaphragm
0/20
HP: 0000776
Congenital diaphragmatic hernia
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002013
Vomiting
0/20
HP: 0002017
Nausea and vomiting
0/20
HP: 0002242
Abnormal intestine morphology
0/20
HP: 0002250
Abnormal large intestine morphology
0/20
HP: 0003011
Abnormality of the musculature
0/20
HP: 0003549
Abnormality of connective tissue
0/20
HP: 0009131
Abnormality of the musculature of the thorax
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0011458
Abdominal symptom
0/20
HP: 0011805
Abnormal skeletal muscle morphology
0/20
HP: 0012373
Abnormal eye physiology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025089
Feculent vomiting
0/20
HP: 0031910
Abnormal cranial nerve physiology
0/20
HP: 0100790
Hernia
0/20