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ICD-10
HPO
Compare GWAS
Super Class
Benign neoplasm of colon, rectum, anus and anal canal
Sub Class
Colon, unspecified
D12.6
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2842
457363
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr18:46453463
rs4939827
SMAD7
T>C
2608
473509
45.82
1.298e-11
0.8367
chr5:33951693
rs16891982
SLC45A2
G>C
281
66780
39.94
2.615e-10
0.6806
chr16:28995057
rs11859822
SPNS1
T>C
100
29336
34.69
3.863e-09
0.5562
chr2:3313043
rs73133173
EIPR1
A>C
33
14430
34.06
5.356e-09
0.3752
chr15:48426484
rs1426654
SLC24A5
A>G
92
27434
33.68
6.492e-09
0.5478
chr6:143395032
rs9403435
AIG1
A>C
310
69736
32.71
1.07e-08
0.7165
chr16:28954860
rs7203982
-
T>C
102
29280
32.69
1.079e-08
0.5686
chr18:60024128
rs58112300
TNFRSF11A
T>C
66
21528
32.24
1.359e-08
0.5014
chr8:10557760
rs57041981
RP1L1
A>G
44
16604
32.16
1.421e-08
0.4339
chr16:29035406
rs74014848
-
A>G
67
21414
30.71
2.99e-08
0.512
chr9:127267689
rs3814134
NR5A1
A>G
105
29101
29.41
5.854e-08
0.5893
chr21:22515494
rs73226339
NCAM2
C>T
295
35863
28.61
8.836e-08
1.377
chr6:100241479
rs9495569
-
A>G
75
22628
28.48
9.488e-08
0.5425
chr14:105961529
rs4983425
TEDC1
A>G
230
53511
28.32
1.028e-07
0.6998
chr8:145639681
rs1871534
SLC39A4
G>C
55
18090
27.6
1.492e-07
0.4973
chr14:75011541
rs934997
LTBP2
A>G
53
17603
27.29
1.75e-07
0.4931
chr4:111903838
rs1484011
-
A>C
116
30789
27.18
1.855e-07
0.6156
chr15:45491394
rs1648299
SHF
T>C
51
17108
26.98
2.054e-07
0.4886
chr10:98742605
rs3814163
LCOR
C>T
99
27265
26.97
2.069e-07
0.5937
chr16:28974658
rs8044999
NFATC2IP
A>G
85
24360
26.91
2.137e-07
0.571
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
2/20
HP: 0002242
Abnormal intestine morphology
2/20
HP: 0002250
Abnormal large intestine morphology
4/20
HP: 0002664
Neoplasm
2/20
HP: 0002672
Gastrointestinal carcinoma
5/20
HP: 0003003
Colon cancer
8/20
HP: 0006749
Malignant gastrointestinal tract tumors
5/20
HP: 0007378
Neoplasm of the gastrointestinal tract
4/20
HP: 0011024
Abnormality of the gastrointestinal tract
2/20
HP: 0011793
Neoplasm by anatomical site
2/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
1/20
HP: 0031368
Intestinal perforation
7/20
HP: 0031369
Colon perforation
6/20
HP: 0040273
Adenocarcinoma of the intestines
5/20
HP: 0040275
Adenocarcinoma of the large intestine
5/20
HP: 0040276
Adenocarcinoma of the colon
9/20
HP: 0100273
Neoplasm of the colon
4/20
HP: 0100834
Neoplasm of the large intestine
3/20
ID
Name
Top Correlation
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20