Statistics
| Female Case | Female Control | % Female |
|---|---|---|
| 82 | 249781 | 41% |
| Male Case | Male Control | % Male |
|---|---|---|
| 120 | 210222 | 59% |
Top SNP Information
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr2:56909573 | rs6732353 | - | C>T | 13 | 8434 | 37.36 | 9.817e-10 | 4.93 |
| chr2:106179676 | rs79252240 | - | T>A | 20 | 17059 | 32.82 | 1.011e-08 | 3.571 |
| chr3:183066624 | rs59610358 | MCF2L2 | A>G | 13 | 8987 | 31.66 | 1.836e-08 | 4.397 |
| chr12:6477813 | rs79549467 | SCNN1A | G>A | 22 | 21702 | 28.85 | 7.819e-08 | 3.176 |
| chr13:42772851 | rs1170097 | DGKH | G>T | 12 | 8507 | 28.0 | 1.215e-07 | 4.265 |
| chr8:119093332 | rs17477161 | EXT1 | G>A | 9 | 5429 | 27.03 | 2.001e-07 | 4.962 |
| chr3:14971073 | rs7619558 | FGD5 | C>A | 9 | 5494 | 26.55 | 2.571e-07 | 4.902 |
| chr15:34647812 | rs78073896 | NUTM1 | C>T | 9 | 5664 | 25.32 | 4.865e-07 | 4.752 |
| chr15:28273350 | rs2290100 | OCA2 | T>C | 18 | 17078 | 25.24 | 5.059e-07 | 3.248 |
| chr11:132003021 | rs55898104 | NTM | G>A | 33 | 42749 | 24.64 | 6.899e-07 | 2.515 |
| chr12:89435022 | rs76235268 | - | A>G | 16 | 14456 | 24.59 | 7.102e-07 | 3.39 |
| chr11:103501476 | rs78486571 | - | T>C | 11 | 7899 | 24.4 | 7.817e-07 | 4.12 |
| chr7:31809968 | rs28785787 | PDE1C | C>T | 9 | 5845 | 24.08 | 9.23e-07 | 4.6 |
| chr18:55259389 | rs7232377 | - | G>A | 10 | 6980 | 23.92 | 1.006e-06 | 4.3 |
| chr4:8076952 | rs73216485 | ABLIM2 | G>A | 10 | 7093 | 23.67 | 1.142e-06 | 4.274 |
| chr13:46316910 | rs9590924 | - | A>G | 42 | 60352 | 23.58 | 1.199e-06 | 2.292 |
| chr18:69411657 | rs7227439 | - | T>G | 17 | 16202 | 23.57 | 1.203e-06 | 3.219 |
| chr2:241945345 | rs6714170 | SNED1 | G>A | 10 | 7050 | 23.48 | 1.265e-06 | 4.251 |
| chr3:114112874 | rs77774261 | ZBTB20 | C>T | 15 | 13439 | 23.33 | 1.362e-06 | 3.401 |
| chr3:150625962 | rs73153832 | AC020636.2 | G>T | 15 | 13512 | 23.05 | 1.575e-06 | 3.379 |
| Location | SNP | Gene | Ref>Alt | Alt in Case | Alt in Control | Chi-square | P-value | Odds ratio |
|---|---|---|---|---|---|---|---|---|
| chr13:108470281 | rs77741808 | FAM155A | G>A | 12 | 4955 | 28.68 | 8.547e-08 | 4.277 |
| chr2:23063682 | rs116340591 | - | G>A | 19 | 10271 | 28.47 | 9.53e-08 | 3.317 |
| chr7:91934701 | rs117939028 | ANKIB1 | C>T | 18 | 9725 | 26.94 | 2.099e-07 | 3.308 |
| chr17:70033675 | rs117161996 | - | C>T | 14 | 6709 | 26.63 | 2.46e-07 | 3.749 |
| chr10:16313321 | rs11253878 | - | A>G | 20 | 11532 | 26.37 | 2.814e-07 | 3.108 |
| chr6:15463228 | rs77439453 | JARID2 | T>G | 17 | 8891 | 25.25 | 5.029e-07 | 3.288 |
| chr21:20142311 | rs117947413 | - | G>A | 14 | 6904 | 24.75 | 6.523e-07 | 3.593 |
| chr18:67563348 | rs1788115 | CD226 | C>T | 29 | 20706 | 24.4 | 7.817e-07 | 2.556 |
| chr4:12332778 | rs73225913 | - | G>A | 31 | 23466 | 24.39 | 7.882e-07 | 2.505 |
| chr17:35544133 | rs80173298 | ACACA | T>C | 14 | 6950 | 24.37 | 7.946e-07 | 3.562 |
| chr5:18715057 | rs72739737 | - | C>T | 13 | 6309 | 24.02 | 9.513e-07 | 3.679 |
| chr10:16176774 | rs58394805 | - | G>A | 16 | 8747 | 23.48 | 1.262e-06 | 3.261 |
| chr10:50876924 | rs118179551 | - | G>A | 12 | 5594 | 23.39 | 1.324e-06 | 3.783 |
| chr14:21242894 | rs76787317 | - | C>T | 16 | 8768 | 23.31 | 1.379e-06 | 3.246 |
| chr4:32778499 | rs75328528 | - | C>T | 20 | 12316 | 23.13 | 1.516e-06 | 2.91 |
| chr20:40950117 | rs62208720 | PTPRT | C>T | 27 | 19172 | 22.86 | 1.745e-06 | 2.554 |
| chr10:15415828 | rs77079513 | - | T>C | 11 | 4991 | 22.84 | 1.762e-06 | 3.928 |
| chr9:18919270 | rs77788331 | SAXO1 | G>A | 21 | 13442 | 22.4 | 2.21e-06 | 2.805 |
| chr10:65736605 | rs10995734 | - | A>G | 22 | 14520 | 21.99 | 2.738e-06 | 2.726 |
| chr9:20317383 | rs2383137 | - | G>C | 20 | 12648 | 21.84 | 2.971e-06 | 2.831 |
Associated Phenotypes ⓘ
| ID | Name | Top Correlation |
|---|---|---|
| HP: 0012289 | Facial neoplasm | 2/20 |
| HP: 0012720 | Neoplasm of the nose | 2/20 |
| HP: 0100630 | Neoplasia of the nasopharynx | 3/20 |