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ICD-10
HPO
Compare GWAS
Super Class
Benign lipomatous neoplasm
Sub Class
Benign lipomatous neoplasm of skin and subcutaneous tissue of head, face and neck
D17.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1118
459087
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr1:159174683
rs2814778
ACKR1
T>C
108
19269
74.48
6.133e-18
2.288
chr12:56722060
rs1918496
PAN2
G>T
71
11546
61.16
5.271e-15
2.491
chr15:28388274
rs56013620
HERC2
G>A
63
9817
60.05
9.245e-15
2.6
chr12:56755058
rs4301822
APOF
A>G
74
12538
57.48
3.413e-14
2.387
chr17:58508582
rs8071181
C17orf64
G>A
85
15332
56.5
5.625e-14
2.248
chr1:204438643
rs1553921
PIK3C2B
T>G
139
29939
56.01
7.224e-14
1.904
chr1:25589335
rs28670433
RSRP1
A>G
81
14552
54.59
1.487e-13
2.258
chr10:1411012
rs12762472
ADARB2
G>C
61
9828
53.53
2.542e-13
2.507
chr1:204438334
rs1124777
PIK3C2B
T>C
135
29250
53.04
3.271e-13
1.889
chr20:545600
rs205887
-
A>G
113
23249
51.98
5.616e-13
1.979
chr18:4157690
rs6506185
DLGAP1
T>C
72
12638
51.36
7.687e-13
2.305
chr1:210419650
rs12088691
SERTAD4
A>C
69
11976
50.8
1.023e-12
2.333
chr3:100368692
rs1144118
ADGRG7
G>A
77
14040
49.98
1.553e-12
2.224
chr18:9536315
rs14336
RALBP1
A>C
72
12795
49.89
1.624e-12
2.279
chr18:19763011
rs3764962
GATA6
A>G
112
23523
48.72
2.959e-12
1.944
chr3:188327555
rs7645635
LPP
T>C
77
14299
47.47
5.59e-12
2.182
chr9:22115105
rs10965235
-
C>A
76
13956
47.37
5.865e-12
2.191
chr6:3185712
rs7754077
-
C>T
93
18579
46.57
8.821e-12
2.031
chr19:42393286
rs717225
ARHGEF1
A>G
105
21838
46.51
9.108e-12
1.953
chr1:204446313
rs2999479
PIK3C2B
C>T
127
28040
46.41
9.611e-12
1.845
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000077
Abnormality of the kidney
1/20
HP: 0000079
Abnormality of the urinary system
3/20
HP: 0000119
Abnormality of the genitourinary system
3/20
HP: 0000157
Abnormality of the tongue
1/20
HP: 0003549
Abnormality of connective tissue
2/20
HP: 0006772
Renal angiomyolipoma
6/20
HP: 0007379
Neoplasm of the genitourinary tract
7/20
HP: 0008696
Renal hamartoma
6/20
HP: 0009124
Abnormal adipose tissue morphology
5/20
HP: 0009726
Renal neoplasm
7/20
HP: 0010935
Abnormality of the upper urinary tract
1/20
HP: 0012031
Lipomatous tumor
6/20
HP: 0012032
Lipoma
7/20
HP: 0012034
Liposarcoma
6/20
HP: 0012181
Entrapment neuropathy
2/20
HP: 0012216
Entrapment neuropathy of suprascapular nerve
5/20
HP: 0012268
Myxoid liposarcoma
6/20
HP: 0030815
Lipoma of the tongue
5/20
HP: 0100648
Neoplasm of the tongue
3/20
HP: 0100649
Neoplasm of the oral cavity
5/20
HP: 0200013
Neoplasm of fatty tissue
6/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000759
Abnormal peripheral nervous system morphology
0/20
HP: 0002664
Neoplasm
0/20
HP: 0009830
Peripheral neuropathy
0/20
HP: 0010566
Hamartoma
0/20
HP: 0010786
Urinary tract neoplasm
0/20
HP: 0011792
Neoplasm by histology
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20