D17.5

Case	Control
303	459902

Case

Control

303

459902

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr5:77224165	rs115479446	-	C>T	33	21123	25.72	3.938e-07	2.409
chr9:36638678	rs72733431	MELK	T>C	30	18794	25.36	4.767e-07	2.486
chr6:30999902	rs4713422	MUC22	G>C	287	340792	25.26	5.013e-07	1.485
chr19:9351414	rs73500718	-	G>C	33	21498	25.17	5.24e-07	2.386
chr6:30999997	rs10947121	MUC22	T>C	287	341255	25.03	5.642e-07	1.483
chr2:77541806	rs79744421	LRRTM4	T>C	25	14716	24.23	8.548e-07	2.63
chr6:30998742	rs6457300	MUC22	T>G	269	319349	23.56	1.208e-06	1.471
chr6:30998879	rs6457301	MUC22	T>C	269	321362	23.12	1.521e-06	1.466
chr3:4861853	rs9858750	ITPR1	C>A	81	73836	22.69	1.903e-06	1.749
chr6:31001467	rs10807077	MUC22	A>G	269	320143	22.57	2.027e-06	1.458
chr7:104138686	rs41023	LHFPL3	A>C	62	52523	22.39	2.224e-06	1.863
chr18:38850168	rs79934877	-	A>C	28	17920	22.18	2.483e-06	2.415
chr10:105391300	rs7918134	SH3PXD2A	C>T	147	156341	21.64	3.284e-06	1.542
chr2:183566418	rs72896659	-	A>G	24	14655	21.58	3.401e-06	2.542
chr10:105391725	rs11191751	SH3PXD2A	A>G	147	156969	21.38	3.772e-06	1.539
chr20:52604416	rs1016279	BCAS1	C>T	150	162315	21.26	4.013e-06	1.539
chr8:140073410	rs58449898	-	C>A	52	42520	21.23	4.066e-06	1.925
chr11:103844779	rs7103465	PDGFD	G>A	19	10474	21.14	4.259e-06	2.79
chr6:155289205	rs6929277	TIAM2	G>A	248	461098	21.01	4.578e-06	0.6911
chr12:103533984	rs77740382	-	C>T	24	14791	20.94	4.729e-06	2.509

Associated Phenotypes ^ⓘ

Name

Top Correlation

ID	Name	Top Correlation
HP: 0000077	Abnormality of the kidney	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000152	Abnormality of head or neck	0/20
HP: 0000153	Abnormality of the mouth	0/20
HP: 0000157	Abnormality of the tongue	0/20
HP: 0000163	Abnormal oral cavity morphology	0/20
HP: 0000234	Abnormality of the head	0/20
HP: 0000271	Abnormality of the face	0/20
HP: 0000707	Abnormality of the nervous system	0/20
HP: 0000759	Abnormal peripheral nervous system morphology	0/20
HP: 0002664	Neoplasm	0/20
HP: 0003549	Abnormality of connective tissue	0/20
HP: 0006772	Renal angiomyolipoma	0/20
HP: 0007379	Neoplasm of the genitourinary tract	0/20
HP: 0008696	Renal hamartoma	0/20
HP: 0009124	Abnormal adipose tissue morphology	0/20
HP: 0009726	Renal neoplasm	0/20
HP: 0009830	Peripheral neuropathy	0/20
HP: 0010566	Hamartoma	0/20
HP: 0010786	Urinary tract neoplasm	0/20
HP: 0010935	Abnormality of the upper urinary tract	0/20
HP: 0011792	Neoplasm by histology	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012031	Lipomatous tumor	0/20
HP: 0012032	Lipoma	0/20
HP: 0012034	Liposarcoma	0/20
HP: 0012181	Entrapment neuropathy	0/20
HP: 0012216	Entrapment neuropathy of suprascapular nerve	0/20
HP: 0012268	Myxoid liposarcoma	0/20
HP: 0012639	Abnormal nervous system morphology	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0030815	Lipoma of the tongue	0/20
HP: 0031816	Abnormal oral morphology	0/20
HP: 0100648	Neoplasm of the tongue	0/20
HP: 0100649	Neoplasm of the oral cavity	0/20
HP: 0200013	Neoplasm of fatty tissue	0/20

Name

Top Correlation

HP: 0000077

Abnormality of the kidney

0/20

HP: 0000079

Abnormality of the urinary system

0/20

HP: 0000118

Phenotypic abnormality

0/20

HP: 0000119