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ICD-10
HPO
Compare GWAS

Super Class
Neoplasm of uncertain or unknown behaviour of oral cavity and digestive organs
Sub Class

Colon

D37.4

Case/Control GWAS ^ⓘ

GWAS of D374

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Interactive Plot

Statistics

Case	Control
462	459743

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr21:39700292	rs56121533	-	C>T	50	25123	26.08	3.281e-07	2.068
chr5:152829162	rs55726194	-	C>G	65	35777	25.08	5.506e-07	1.883
chr5:8151082	rs336158	-	A>G	235	178978	22.45	2.152e-06	1.424
chr6:2957584	rs55722256	SERPINB6	T>C	39	19081	21.44	3.651e-06	2.097
chr3:148459395	rs5182	AGTR1	C>T	375	449936	21.32	3.881e-06	0.738
chr4:147511716	rs112212828	-	A>G	29	12784	21.02	4.547e-06	2.317
chr4:40688238	rs114533457	-	C>T	27	11584	20.99	4.627e-06	2.381
chr19:40994144	rs7256439	SPTBN4	A>G	44	22770	20.77	5.185e-06	1.994
chr6:145232606	rs4896764	-	G>C	119	81245	19.74	8.879e-06	1.54
chr4:147723928	rs34581318	TTC29	G>T	147	105807	19.64	9.329e-06	1.485
chr15:79484783	rs72735085	-	G>A	32	15048	19.6	9.529e-06	2.175
chr10:54262181	rs1733732	-	T>C	73	44511	19.54	9.839e-06	1.703
chr11:86259279	rs17819176	ME3	A>G	152	109058	19.52	9.945e-06	1.474
chr1:207402248	rs114932173	-	G>A	35	17108	19.4	1.06e-05	2.1
chr17:69573536	rs17180026	-	A>G	37	18478	19.37	1.074e-05	2.06
chr15:78379184	rs56280304	SH2D7	G>A	159	116045	18.84	1.422e-05	1.454
chr13:64443749	rs76232369	-	C>T	41	21537	18.84	1.424e-05	1.975
chr17:68048362	rs117788885	-	G>A	26	11521	18.75	1.491e-05	2.31
chr3:186009438	rs6787918	DGKG	T>G	369	309764	18.44	1.75e-05	1.329
chr14:41468428	rs72673765	-	G>A	36	18106	18.44	1.757e-05	2.044

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002250	Abnormal large intestine morphology	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002672	Gastrointestinal carcinoma	0/20
HP: 0003003	Colon cancer	0/20
HP: 0006749	Malignant gastrointestinal tract tumors	0/20
HP: 0007378	Neoplasm of the gastrointestinal tract	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0031368	Intestinal perforation	0/20
HP: 0031369	Colon perforation	0/20
HP: 0040273	Adenocarcinoma of the intestines	0/20
HP: 0040275	Adenocarcinoma of the large intestine	0/20
HP: 0040276	Adenocarcinoma of the colon	0/20
HP: 0100273	Neoplasm of the colon	0/20
HP: 0100834	Neoplasm of the large intestine	0/20