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ICD-10
HPO
Compare GWAS
Super Class
Mental and behavioural disorders due to use of alcohol
Sub Class
Harmful use
F10.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
3990
456215
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr4:100239319
rs1229984
ADH1B
C>T
100
30376
100.8
9.989e-24
0.3779
chr6:396321
rs12203592
IRF4
C>T
2049
199162
86.08
1.724e-20
1.268
chr6:421281
rs62389423
-
G>A
1684
162357
73.62
9.482e-18
1.265
chr5:33958959
rs28777
SLC45A2
A>C
317
56678
61.64
4.117e-15
0.6394
chr5:33951693
rs16891982
SLC45A2
G>C
391
66670
60.6
7.01e-15
0.6691
chr15:48426484
rs1426654
SLC24A5
A>G
119
27407
58.39
2.146e-14
0.5
chr2:135837906
rs7570971
RAB3GAP1
C>A
2280
301303
50.07
1.481e-12
0.8398
chr15:48392165
rs1834640
-
A>G
156
31468
48.96
2.613e-12
0.5714
chr5:33955673
rs35391
SLC45A2
C>T
221
40761
48.8
2.833e-12
0.623
chr5:33955326
rs35390
SLC45A2
A>C
223
40926
47.96
4.341e-12
0.6268
chr4:38798648
rs5743618
TLR1
C>A
1643
233314
46.78
7.926e-12
0.825
chr13:72441665
rs3759505
-
C>T
62
16653
46.02
1.171e-11
0.4311
chr7:38331504
rs1860521
-
C>T
71
17850
44.42
2.655e-11
0.4601
chr2:66725070
rs12995572
MEIS1
G>C
133
27018
42.78
6.132e-11
0.568
chr2:136407479
rs1446585
R3HDM1
A>G
1998
264408
42.47
7.172e-11
0.8455
chr1:65860660
rs12077111
DNAJC6
T>C
130
26501
42.37
7.539e-11
0.566
chr1:65858151
rs11208644
DNAJC6
C>T
129
26361
42.12
8.583e-11
0.5657
chr5:9203914
rs1805972
SEMA5A
T>C
200
36475
41.69
1.07e-10
0.6317
chr4:38799710
rs4833095
TLR1
T>C
1642
219911
40.11
2.401e-10
0.8395
chr4:100250419
rs1789891
ADH1B
C>A
1614
163589
38.58
5.247e-10
1.189
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
5/20
HP: 0000152
Abnormality of head or neck
5/20
HP: 0000153
Abnormality of the mouth
2/20
HP: 0000163
Abnormal oral cavity morphology
2/20
HP: 0000234
Abnormality of the head
5/20
HP: 0000271
Abnormality of the face
3/20
HP: 0000707
Abnormality of the nervous system
3/20
HP: 0000708
Behavioral abnormality
1/20
HP: 0000709
Psychosis
4/20
HP: 0000720
Mood swings
3/20
HP: 0000725
Psychotic episodes
4/20
HP: 0000924
Abnormality of the skeletal system
3/20
HP: 0000929
Abnormal skull morphology
5/20
HP: 0001249
Intellectual disability
5/20
HP: 0001250
Seizure
1/20
HP: 0001357
Plagiocephaly
5/20
HP: 0002342
Intellectual disability, moderate
5/20
HP: 0002648
Abnormality of calvarial morphology
3/20
HP: 0002683
Abnormality of the calvaria
2/20
HP: 0006919
Abnormal aggressive, impulsive or violent behavior
6/20
HP: 0009121
Abnormal axial skeleton morphology
1/20
HP: 0011446
Abnormality of higher mental function
5/20
HP: 0011830
Abnormal oral mucosa morphology
2/20
HP: 0011842
Abnormality of skeletal morphology
3/20
HP: 0012166
Skin-picking
6/20
HP: 0012167
Hair-pulling
5/20
HP: 0012638
Abnormal nervous system physiology
2/20
HP: 0012759
Neurodevelopmental abnormality
10/20
HP: 0025031
Abnormality of the digestive system
2/20
HP: 0025033
Abnormality of digestive system morphology
3/20
HP: 0025253
Claustrophobia
3/20
HP: 0031466
Impairment in personality functioning
2/20
HP: 0031816
Abnormal oral morphology
2/20
HP: 0031951
Nocturnal seizures
5/20
HP: 0032154
Aphthous ulcer
2/20
HP: 0100543
Cognitive impairment
4/20
HP: 0100716
Self-injurious behavior
6/20
HP: 0100851
Abnormal emotion/affect behavior
4/20
HP: 0100852
Abnormal fear/anxiety-related behavior
4/20
ID
Name
Top Correlation