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ICD-10
HPO
Compare GWAS
Super Class
Mental and behavioural disorders due to use of tobacco
Sub Class
Harmful use
F17.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
15947
444258
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr9:136478355
rs3025343
-
G>A
4116
102707
50.0
1.535e-12
1.127
chr9:136473053
rs113864525
FAM163B
C>A
4086
102295
46.53
9.028e-12
1.123
chr9:136477511
rs739447
-
C>T
4092
102485
46.12
1.113e-11
1.122
chr9:136472460
rs56057809
FAM163B
C>T
4073
102189
44.96
2.012e-11
1.121
chr9:136459454
rs111280114
FAM163B
A>G
3569
89320
37.17
1.083e-09
1.116
chr9:136511127
rs117214842
DBH
G>A
2531
62387
36.96
1.208e-09
1.137
chr16:75628094
rs58273293
-
G>A
1732
55178
34.08
5.288e-09
0.864
chr15:78907656
rs6495308
CHRNA3
T>C
7633
224799
34.03
5.414e-09
0.9258
chr16:75646576
rs3743599
ADAT1
G>T
1718
54609
32.65
1.101e-08
0.8662
chr9:136455785
rs112151537
FAM163B
C>T
2065
50607
32.57
1.151e-08
1.141
chr16:75590092
rs3743601
TMEM231
G>C
1755
55584
31.54
1.959e-08
0.8696
chr7:114223723
rs1229761
FOXP2
A>C
10622
308318
30.73
2.97e-08
0.9361
chr15:78891627
rs12910984
CHRNA3
A>G
7630
223846
29.96
4.419e-08
0.9302
chr15:78863472
rs667282
CHRNA5
T>C
7571
222032
29.76
4.892e-08
0.9302
chr15:78896547
rs938682
CHRNA3
A>G
7608
223024
29.04
7.094e-08
0.9312
chr9:136493182
rs2519764
-
A>C
10742
285039
29.02
7.163e-08
1.066
chr15:78873119
rs569207
CHRNA5
C>T
7579
222267
28.98
7.302e-08
0.9311
chr16:75685746
rs17764821
TERF2IP
T>C
1880
58928
28.74
8.276e-08
0.8788
chr20:61983901
rs45461993
CHRNA4
G>A
2950
74434
28.16
1.117e-07
1.11
chr14:104203938
rs8004408
PPP1R13B
G>A
14585
391486
27.68
1.435e-07
1.061
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000709
Psychosis
10/20
HP: 0000720
Mood swings
8/20
HP: 0000725
Psychotic episodes
10/20
HP: 0001249
Intellectual disability
7/20
HP: 0001357
Plagiocephaly
10/20
HP: 0002342
Intellectual disability, moderate
8/20
HP: 0002648
Abnormality of calvarial morphology
1/20
HP: 0006919
Abnormal aggressive, impulsive or violent behavior
4/20
HP: 0011830
Abnormal oral mucosa morphology
3/20
HP: 0012166
Skin-picking
4/20
HP: 0012167
Hair-pulling
5/20
HP: 0025253
Claustrophobia
9/20
HP: 0031466
Impairment in personality functioning
2/20
HP: 0031951
Nocturnal seizures
9/20
HP: 0032154
Aphthous ulcer
8/20
HP: 0100716
Self-injurious behavior
4/20
HP: 0100852
Abnormal fear/anxiety-related behavior
1/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000929
Abnormal skull morphology
0/20
HP: 0001250
Seizure
0/20
HP: 0002683
Abnormality of the calvaria
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0011446
Abnormality of higher mental function
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012759
Neurodevelopmental abnormality
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20
HP: 0100543
Cognitive impairment
0/20
HP: 0100851
Abnormal emotion/affect behavior
0/20