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ICD-10
HPO
Compare GWAS
Super Class
Schizophrenia
Sub Class
Paranoid schizophrenia
F20.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
278
459927
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr1:159174683
rs2814778
ACKR1
T>C
99
19278
518.5
9.075e-115
7.986
chr8:145639681
rs1871534
SLC39A4
G>C
87
18058
420.3
2.082e-93
7.399
chr16:29790864
rs235636
ZG16
A>G
71
12750
410.7
2.644e-91
8.338
chr1:207782889
rs17047661
CR1
A>G
75
14244
403.6
9.004e-90
7.918
chr6:136480972
rs9483910
PDE7B
C>T
93
21279
397.2
2.272e-88
6.795
chr16:88321213
rs7184400
-
A>G
71
13138
393.9
1.153e-87
8.07
chr2:66725070
rs12995572
MEIS1
G>C
106
27045
384.0
1.649e-85
6.107
chr10:65924376
rs4390238
-
G>T
66
11809
383.1
2.686e-85
8.31
chr12:56755058
rs4301822
APOF
A>G
68
12544
378.0
3.434e-84
8.058
chr17:29298304
rs7225888
RNF135
C>G
88
19847
377.5
4.366e-84
6.766
chr9:117110112
Affx-52344420
AKNA
T>TG
73
14506
369.6
2.27e-82
7.535
chr17:29290106
rs55861543
-
C>T
89
20670
366.4
1.157e-81
6.57
chr9:129979758
rs3780318
RALGPS1
G>A
77
16164
363.1
5.916e-81
7.171
chr8:10557760
rs57041981
RP1L1
A>G
77
16571
353.6
7.096e-79
7.032
chr6:37328215
Affx-28571852
RNF8
C>CT
84
19232
352.7
1.083e-78
6.628
chr13:58552574
rs1436689
-
T>C
63
11622
351.1
2.473e-78
8.02
chr19:42393286
rs717225
ARHGEF1
A>G
89
21854
339.0
1.076e-75
6.207
chr6:124133484
rs9490939
NKAIN2
A>G
69
14049
338.5
1.361e-75
7.32
chr15:48426484
rs1426654
SLC24A5
A>G
101
27425
335.7
5.408e-75
5.713
chr17:58525018
rs34146848
APPBP2
C>T
57
10085
334.7
9.258e-75
8.296
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000707
Abnormality of the nervous system
1/20
HP: 0000746
Delusions
9/20
HP: 0000828
Abnormality of the parathyroid gland
4/20
HP: 0000860
Parathyroid hypoplasia
17/20
HP: 0001250
Seizure
2/20
HP: 0001332
Dystonia
3/20
HP: 0002063
Rigidity
10/20
HP: 0002362
Shuffling gait
18/20
HP: 0002530
Axial dystonia
14/20
HP: 0004324
Increased body weight
5/20
HP: 0007359
Focal-onset seizure
6/20
HP: 0011157
Focal sensory seizure
9/20
HP: 0011162
Psychic auras
20/20
HP: 0011442
Abnormal central motor function
1/20
HP: 0011766
Abnormality of the parathyroid morphology
11/20
HP: 0011768
Parathyroid dysgenesis
14/20
HP: 0011999
Paranoia
14/20
HP: 0012075
Personality disorder
2/20
HP: 0012076
Borderline personality disorder
2/20
HP: 0025502
Overweight
5/20
HP: 0030213
Emotional blunting
17/20
HP: 0100022
Abnormality of movement
1/20
HP: 0100543
Cognitive impairment
3/20
HP: 0100851
Abnormal emotion/affect behavior
1/20
ID
Name
Top Correlation
HP: 0000708
Behavioral abnormality
0/20
HP: 0001288
Gait disturbance
0/20
HP: 0001507
Growth abnormality
0/20
HP: 0002354
Memory impairment
0/20
HP: 0004323
Abnormality of body weight
0/20
HP: 0006919
Abnormal aggressive, impulsive or violent behavior
0/20
HP: 0011446
Abnormality of higher mental function
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0031071
Abnormal endocrine morphology
0/20
HP: 0031466
Impairment in personality functioning
0/20
HP: 0100716
Self-injurious behavior
0/20