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ICD-10
HPO
Compare GWAS
Super Class
Other diseases of spinal cord
Sub Class
Cord compression, unspecified
G95.2
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
357
459848
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr19:16303815
rs117289626
-
G>T
39
20661
32.77
1.036e-08
2.485
chr16:51566155
rs1558680
-
C>G
247
232737
31.56
1.938e-08
1.541
chr3:168326588
rs116646667
-
G>C
48
29015
28.84
7.88e-08
2.184
chr4:138155364
rs76085351
-
G>A
26
12715
26.09
3.259e-07
2.666
chr15:97974750
rs28645193
-
C>T
28
14313
25.39
4.674e-07
2.551
chr11:43990987
rs118026959
-
G>A
30
16233
23.83
1.052e-06
2.414
chr4:8591787
rs7683057
GPR78
C>T
59
40903
23.63
1.17e-06
1.911
chr3:131308939
rs9870963
CPNE4
C>T
34
19587
23.27
1.405e-06
2.279
chr11:109852602
rs11213218
RDX
G>T
56
38454
23.21
1.45e-06
1.93
chr4:76788564
rs34155925
PPEF2
C>T
21
9857
23.19
1.465e-06
2.778
chr12:16730275
rs12231242
MGST1
C>T
62
44223
22.94
1.67e-06
1.868
chr1:61585883
rs116278962
NFIA
A>G
40
24803
22.24
2.4e-06
2.115
chr19:41056792
rs843777
SPTBN4
G>A
428
461688
22.23
2.422e-06
1.408
chr4:155195762
rs80000145
DCHS2
C>T
38
23309
21.82
2.993e-06
2.138
chr1:205894276
rs7366893
SLC26A9
C>T
113
96373
21.6
3.353e-06
1.6
chr11:115066642
rs45620533
CADM1
G>C
24
12343
21.53
3.49e-06
2.533
chr18:35084108
rs1786798
CELF4
A>G
385
412527
20.93
4.773e-06
1.391
chr16:51565143
rs9933860
-
G>T
248
246422
20.6
5.669e-06
1.418
chr1:17838397
rs75245381
-
C>A
59
42596
20.56
5.774e-06
1.832
chr1:105273563
rs75590787
-
C>G
39
24791
20.28
6.703e-06
2.064
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000885
Broad ribs
17/20
HP: 0008445
Cervical spinal canal stenosis
1/20
HP: 0011407
Proportionate tall stature
20/20
HP: 0012307
Spatulate ribs
17/20
HP: 0012415
Abnormal blood gas level
1/20
HP: 0012416
Hypercapnia
3/20
HP: 0031993
Hoffmann sign
8/20
HP: 0410210
Abnormal cord blood measurement
20/20
HP: 0410211
Abnormal blood gas level in cord blood
20/20
HP: 0410214
Hypercapnia in cord blood
20/20
HP: 0500164
Abnormal blood carbon dioxide level
2/20
HP: 0500258
Abnormal carbon dioxide level in cord blood
20/20
ID
Name
Top Correlation
HP: 0000002
Abnormality of body height
0/20
HP: 0000098
Tall stature
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000464
Abnormality of the neck
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000765
Abnormality of the thorax
0/20
HP: 0000772
Abnormality of the ribs
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000925
Abnormality of the vertebral column
0/20
HP: 0000926
Platyspondyly
0/20
HP: 0001194
Abnormalities of placenta or umbilical cord
0/20
HP: 0001197
Abnormality of prenatal development or birth
0/20
HP: 0001507
Growth abnormality
0/20
HP: 0001547
Abnormality of the rib cage
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0002011
Morphological central nervous system abnormality
0/20
HP: 0002060
Abnormal cerebral morphology
0/20
HP: 0002062
Morphological abnormality of the pyramidal tract
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002143
Abnormality of the spinal cord
0/20
HP: 0002176
Spinal cord compression
0/20
HP: 0002196
Myelopathy
0/20
HP: 0002318
Cervical myelopathy
0/20
HP: 0002341
Cervical cord compression
0/20
HP: 0002385
Paraparesis
0/20
HP: 0002492
Morphological abnormality of the corticospinal tract
0/20
HP: 0002493
Upper motor neuron dysfunction
0/20
HP: 0002538
Abnormality of the cerebral cortex
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0003312
Abnormal form of the vertebral bodies
0/20
HP: 0003319
Abnormality of the cervical spine
0/20
HP: 0003416
Spinal canal stenosis
0/20
HP: 0003468
Abnormal vertebral morphology
0/20
HP: 0004558
Cervical platyspondyly
0/20
HP: 0005622
Broad long bones
0/20
HP: 0005905
Abnormal cervical curvature
0/20
HP: 0007256
Abnormal pyramidal sign
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0010549
Weakness due to upper motor neuron dysfunction
0/20
HP: 0010551
Paraplegia/paraparesis
0/20
HP: 0010674
Abnormality of the curvature of the vertebral column
0/20
HP: 0010881
Abnormality of the umbilical cord
0/20
HP: 0011017
Abnormal cellular physiology
0/20
HP: 0011314
Abnormality of long bone morphology
0/20
HP: 0011442
Abnormal central motor function
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0011844
Abnormal appendicular skeleton morphology
0/20
HP: 0012443
Abnormality of brain morphology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0025354
Abnormal cellular phenotype
0/20
HP: 0031826
Abnormal reflex
0/20
HP: 0100022
Abnormality of movement
0/20
HP: 0100547
Abnormality of forebrain morphology
0/20