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ICD-10
HPO
Compare GWAS
Super Class
Diseases of arteries, arterioles and capillaries
Sub Class
Raynaud's syndrome
Peripheral vascular disease, unspecified
Other peripheral vascular diseases
I73
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
5225
454981
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr6:161010118
rs10455872
LPA
A>G
1080
72621
83.01
8.177e-20
1.34
chr6:160997118
rs74617384
LPA
A>T
1052
70777
82.06
1.319e-19
1.343
chr9:22124477
rs10757278
-
A>G
5636
460477
57.39
3.579e-14
1.157
chr9:22125503
rs1333049
-
G>C
5635
460816
57.35
3.656e-14
1.157
chr9:22096055
rs10757274
-
A>G
5682
466883
52.16
5.122e-13
1.149
chr9:22098574
rs4977574
-
A>G
5659
464775
51.74
6.327e-13
1.148
chr9:22125347
rs1333048
-
A>C
5803
477867
49.79
1.713e-12
1.145
chr9:22088260
rs10757272
-
C>T
5670
466091
49.7
1.787e-12
1.145
chr6:30802465
rs1264341
-
T>C
1808
138679
39.09
4.045e-10
1.176
chr6:30777498
rs1264361
-
A>G
1881
144804
38.98
4.274e-10
1.172
chr6:30838497
rs2535340
-
T>C
1806
138615
38.69
4.959e-10
1.175
chr6:30879636
rs886420
GTF2H4
C>T
1786
136886
38.67
5.013e-10
1.175
chr6:30857894
rs1264322
DDR1
G>A
1805
138754
38.39
5.806e-10
1.174
chr6:30781301
rs886425
-
T>C
1884
145283
38.37
5.859e-10
1.171
chr6:30864279
rs886422
DDR1
C>T
1803
138700
38.19
6.42e-10
1.174
chr6:30782002
rs886424
-
C>T
1878
144812
38.16
6.505e-10
1.171
chr6:30787762
rs1264353
-
C>A
1876
144769
37.6
8.686e-10
1.169
chr6:30882415
rs1264304
VARS2
C>T
1801
138642
37.59
8.722e-10
1.172
chr6:30746519
rs3130673
-
G>T
1835
141740
36.06
1.909e-09
1.167
chr6:30764081
rs3130641
-
C>T
1836
141800
36.05
1.923e-09
1.167
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000356
Abnormality of the outer ear
4/20
HP: 0000363
Abnormality of earlobe
8/20
HP: 0000377
Abnormality of the pinna
8/20
HP: 0000743
Frontal release signs
19/20
HP: 0001218
Autoamputation
18/20
HP: 0003207
Arterial calcification
8/20
HP: 0004417
Intermittent claudication
8/20
HP: 0004934
Vascular calcification
8/20
HP: 0004950
Peripheral arterial stenosis
8/20
HP: 0005185
Global systolic dysfunction
20/20
HP: 0005344
Abnormal carotid artery morphology
8/20
HP: 0006121
Acral ulceration
18/20
HP: 0006673
Reduced systolic function
17/20
HP: 0007460
Autoamputation of digits
18/20
HP: 0008112
Plantar flexion contractures
18/20
HP: 0008366
Contractures involving the joints of the feet
8/20
HP: 0009908
Anterior creases of earlobe
8/20
HP: 0010766
Ectopic calcification
1/20
HP: 0011004
Abnormal systemic arterial morphology
8/20
HP: 0011301
Absent foot
19/20
HP: 0011915
Cardiovascular calcification
8/20
HP: 0012456
Medial arterial calcification
17/20
HP: 0012639
Abnormal nervous system morphology
1/20
HP: 0025323
Abnormal arterial physiology
8/20
HP: 0030163
Abnormal vascular physiology
8/20
HP: 0030680
Abnormality of cardiovascular system morphology
2/20
HP: 0031293
Digital pitting scar
3/20
HP: 0031917
Digital ulcer
18/20
HP: 0100324
Scleroderma
4/20
HP: 0100545
Arterial stenosis
8/20
HP: 0100546
Carotid artery stenosis
14/20
HP: 0100758
Gangrene
8/20
HP: 0200042
Skin ulcer
13/20
HP: 0550003
Proximal scleroderma
6/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000478
Abnormality of the eye
0/20
HP: 0000504
Abnormality of vision
0/20
HP: 0000505
Visual impairment
0/20
HP: 0000598
Abnormality of the ear
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000759
Abnormal peripheral nervous system morphology
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0000961
Cyanosis
0/20
HP: 0000988
Skin rash
0/20
HP: 0001005
Dermatological manifestations of systemic disorders
0/20
HP: 0001063
Acrocyanosis
0/20
HP: 0001072
Thickened skin
0/20
HP: 0001117
Sudden loss of visual acuity
0/20
HP: 0001123
Visual field defect
0/20
HP: 0001155
Abnormality of the hand
0/20
HP: 0001167
Abnormality of finger
0/20
HP: 0001371
Flexion contracture
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001760
Abnormality of the foot
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001977
Abnormal thrombosis
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002577
Abnormality of the stomach
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002638
Superficial thrombophlebitis
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0002813
Abnormality of limb bone morphology
0/20
HP: 0002814
Abnormality of the lower limb
0/20
HP: 0002817
Abnormality of the upper limb
0/20
HP: 0003011
Abnormality of the musculature
0/20
HP: 0003121
Limb joint contracture
0/20
HP: 0003474
Sensory impairment
0/20
HP: 0003549
Abnormality of connective tissue
0/20
HP: 0003761
Calcinosis
0/20
HP: 0004295
Abnormality of the gastric mucosa
0/20
HP: 0004386
Gastrointestinal inflammation
0/20
HP: 0004418
Thrombophlebitis
0/20
HP: 0004936
Venous thrombosis
0/20
HP: 0005246
Giant hypertrophic gastritis
0/20
HP: 0005263
Gastritis
0/20
HP: 0005750
Contractures of the joints of the lower limbs
0/20
HP: 0006493
Aplasia/hypoplasia involving bones of the lower limbs
0/20
HP: 0006494
Aplasia/Hypoplasia involving bones of the feet
0/20
HP: 0007663
Reduced visual acuity
0/20
HP: 0009115
Aplasia/hypoplasia involving the skeleton
0/20
HP: 0009815
Aplasia/hypoplasia of the extremities
0/20
HP: 0009830
Peripheral neuropathy
0/20
HP: 0010832
Abnormality of pain sensation
0/20
HP: 0010978
Abnormality of immune system physiology
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011121
Abnormality of skin morphology
0/20
HP: 0011122
Abnormality of skin physiology
0/20
HP: 0011123
Inflammatory abnormality of the skin
0/20
HP: 0011297
Abnormal digit morphology
0/20
HP: 0011354
Generalized abnormality of skin
0/20
HP: 0011355
Localized skin lesion
0/20
HP: 0011729
Abnormality of joint mobility
0/20
HP: 0011805
Abnormal skeletal muscle morphology
0/20
HP: 0011838
Sclerodactyly
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0011843
Abnormality of skeletal physiology
0/20
HP: 0011844
Abnormal appendicular skeleton morphology
0/20
HP: 0012089
Arteritis
0/20
HP: 0012373
Abnormal eye physiology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0012719
Functional abnormality of the gastrointestinal tract
0/20
HP: 0025015
Abnormal vascular morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025131
Finger swelling
0/20
HP: 0025142
Constitutional symptom
0/20
HP: 0025300
Malar rash
0/20
HP: 0030531
Altitudinal visual field defect
0/20
HP: 0030880
Raynaud phenomenon
0/20
HP: 0031703
Abnormal ear morphology
0/20
HP: 0040064
Abnormality of limbs
0/20
HP: 0040068
Abnormality of limb bone
0/20
HP: 0040069
Abnormal lower limb bone morphology
0/20
HP: 0045060
Aplasia/hypoplasia involving bones of the extremities
0/20
HP: 0100022
Abnormality of movement
0/20
HP: 0100261
Abnormal tendon morphology
0/20
HP: 0100276
Skin pit
0/20