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ICD-10
HPO
Compare GWAS
Super Class
Varicose veins of lower extremities
Sub Class
Varicose veins of lower extremities without ulcer or inflammation
I83.9
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
12525
447680
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:48426484
rs1426654
SLC24A5
A>G
375
27151
184.9
4.112e-42
0.4975
chr1:10833232
rs58064215
CASZ1
G>C
8902
288340
180.2
4.493e-41
1.195
chr15:48392165
rs1834640
-
A>G
490
31134
156.7
6.034e-36
0.5668
chr8:145639681
rs1871534
SLC39A4
G>C
228
17917
141.3
1.381e-32
0.4601
chr5:33951693
rs16891982
SLC45A2
G>C
1323
65738
132.7
1.05e-30
0.7211
chr9:140957557
rs11137360
CACNA1B
A>G
299
20707
127.6
1.383e-29
0.5219
chr1:159174683
rs2814778
ACKR1
T>C
266
19111
127.1
1.773e-29
0.5035
chr16:88744470
rs8048897
SNAI3
G>T
2771
82344
126.0
3.033e-29
1.257
chr5:147666044
rs7707813
-
T>C
258
18505
122.5
1.788e-28
0.5046
chr17:58508582
rs8071181
C17orf64
G>A
192
15225
121.7
2.753e-28
0.4566
chr16:88808743
Affx-13429237
PIEZO1
G>A
3873
119705
121.4
3.156e-28
1.215
chr16:88783521
Affx-13428745
PIEZO1
C>T
3260
99106
121.0
3.817e-28
1.232
chr8:10557760
rs57041981
RP1L1
A>G
217
16431
120.9
3.969e-28
0.4782
chr5:147671850
rs7724380
-
G>A
289
19894
120.6
4.727e-28
0.5256
chr19:42393286
rs717225
ARHGEF1
A>G
332
21611
114.5
1.02e-26
0.5559
chr7:38331504
rs1860521
-
C>T
249
17672
114.3
1.138e-26
0.5103
chr16:88853729
Affx-13430005
-
T>C
12347
419626
114.1
1.235e-26
1.144
chr16:88792047
Affx-13428879
PIEZO1
G>A
3629
112037
113.9
1.343e-26
1.214
chr9:137925543
rs7027926
-
G>A
228
16592
113.0
2.114e-26
0.4976
chr16:88783449
rs8057031
PIEZO1
G>C
12224
415230
112.7
2.568e-26
1.143
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
3/20
HP: 0000152
Abnormality of head or neck
2/20
HP: 0000234
Abnormality of the head
2/20
HP: 0000504
Abnormality of vision
3/20
HP: 0000505
Visual impairment
9/20
HP: 0000924
Abnormality of the skeletal system
2/20
HP: 0001626
Abnormality of the cardiovascular system
1/20
HP: 0001977
Abnormal thrombosis
3/20
HP: 0002597
Abnormality of the vasculature
1/20
HP: 0002619
Varicose veins
18/20
HP: 0002624
Abnormal venous morphology
16/20
HP: 0002644
Abnormality of pelvic girdle bone morphology
3/20
HP: 0002813
Abnormality of limb bone morphology
3/20
HP: 0002814
Abnormality of the lower limb
3/20
HP: 0004418
Thrombophlebitis
4/20
HP: 0004936
Venous thrombosis
3/20
HP: 0005293
Venous insufficiency
16/20
HP: 0008839
Hypoplastic pelvis
15/20
HP: 0009103
Aplasia/Hypoplasia involving the pelvis
14/20
HP: 0011842
Abnormality of skeletal morphology
2/20
HP: 0011844
Abnormal appendicular skeleton morphology
3/20
HP: 0025015
Abnormal vascular morphology
11/20
HP: 0030846
Abnormality of venous physiology
15/20
HP: 0040064
Abnormality of limbs
3/20
HP: 0040068
Abnormality of limb bone
3/20
HP: 0040069
Abnormal lower limb bone morphology
4/20
HP: 0100704
Cerebral visual impairment
16/20
ID
Name
Top Correlation
HP: 0000271
Abnormality of the face
0/20
HP: 0000478
Abnormality of the eye
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0012373
Abnormal eye physiology
0/20
HP: 0030163
Abnormal vascular physiology
0/20
HP: 0030680
Abnormality of cardiovascular system morphology
0/20