I84.3

Case	Control
308	459897

Case

Control

308

459897

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr12:109753434	rs118191224	-	T>C	20	10573	25.01	5.704e-07	2.955
chr4:163135813	rs78493864	-	G>A	34	22736	24.89	6.065e-07	2.35
chr20:7876020	rs55945246	HAO1	A>G	59	49120	23.79	1.077e-06	1.926
chr13:35808410	rs77827766	NBEA	G>C	35	24341	23.54	1.222e-06	2.273
chr14:54623656	rs76340765	-	C>G	43	32487	23.16	1.494e-06	2.103
chr15:84778891	rs9806618	-	A>G	199	226946	22.89	1.713e-06	1.503
chr4:130982394	rs6838492	-	C>A	36	25608	22.77	1.828e-06	2.221
chr17:30006752	rs117584594	-	C>T	38	27654	22.69	1.906e-06	2.176
chr6:129647450	rs11965687	LAMA2	C>T	23	13602	22.63	1.965e-06	2.644
chr2:47786807	rs11885765	MSH2	A>C	22	13031	22.08	2.62e-06	2.667
chr6:165724238	rs76785996	-	G>A	29	19239	21.81	3.013e-06	2.366
chr20:7752756	rs74745721	-	G>A	33	23163	21.64	3.291e-06	2.248
chr3:141724961	rs11569185	TFDP2	C>T	20	11363	21.43	3.67e-06	2.744
chr1:110983809	rs75741142	-	G>C	30	20419	21.35	3.825e-06	2.316
chr9:1446942	rs75309834	-	C>T	39	29138	21.32	3.893e-06	2.109
chr4:57048790	rs17086394	CRACD	G>A	20	11414	21.2	4.136e-06	2.73
chr2:148377892	rs4427955	-	T>C	257	481448	21.05	4.474e-06	0.6913
chr20:58461802	rs142942464	SYCP2	T>C	21	12421	20.99	4.611e-06	2.66
chr13:21797456	rs13313266	-	T>C	100	101216	20.88	4.898e-06	1.645
chr13:35599975	rs73167738	NBEA	G>A	36	26654	20.7	5.363e-06	2.144

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation
HP: 0010771	Pilonidal abscess	1/20

Name

Top Correlation

HP: 0010771

Pilonidal abscess

1/20

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000924	Abnormality of the skeletal system	0/20
HP: 0000925	Abnormality of the vertebral column	0/20
HP: 0000951	Abnormality of the skin	0/20
HP: 0001574	Abnormality of the integument	0/20
HP: 0002012	Abnormality of the abdominal organs	0/20
HP: 0002025	Anal stenosis	0/20
HP: 0002034	Abnormality of the rectum	0/20
HP: 0002242	Abnormal intestine morphology	0/20
HP: 0002250	Abnormal large intestine morphology	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0004378	Abnormality of the anus	0/20
HP: 0005107	Abnormal sacrum morphology	0/20
HP: 0009121	Abnormal axial skeleton morphology	0/20
HP: 0009789	Perianal abscess	0/20
HP: 0010609	Skin tags	0/20
HP: 0010767	Sacrococcygeal pilonidal abnormality	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011024	Abnormality of the gastrointestinal tract	0/20
HP: 0011121	Abnormality of skin morphology	0/20
HP: 0011122	Abnormality of skin physiology	0/20
HP: 0011123	Inflammatory abnormality of the skin	0/20
HP: 0011355	Localized skin lesion	0/20
HP: 0011842	Abnormality of skeletal morphology	0/20
HP: 0012390	Anal fissure	0/20
HP: 0012531	Pain	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0012700	Abnormal large intestine physiology	0/20
HP: 0012701	Bowel urgency	0/20
HP: 0012718	Morphological abnormality of the gastrointestinal tract	0/20
HP: 0012732	Anorectal anomaly	0/20
HP: 0025031	Abnormality of the digestive system	0/20
HP: 0025032	Abnormality of digestive system physiology	0/20
HP: 0025033	Abnormality of digestive system morphology	0/20
HP: 0025142	Constitutional symptom	0/20
HP: 0031292	Cutaneous abscess	0/20
HP: 0032551	Hemorrhoids	0/20
HP: 0500005	Anal pain	0/20

Name

Top Correlation

HP: 0000118

Phenotypic abnormality

0/20

HP: 0000924

Abnormality of the skeletal system

0/20

HP: 0000925

Abnormality of the vertebral column

0/20

HP: 0000951