J13

Case	Control
371	459823

Case

Control

371

459823

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr3:121304242	rs79027605	ARGFX	G>A	37	17592	35.88	2.098e-09	2.64
chr10:14993655	rs11259407	DCLRE1C	T>G	39	19467	33.94	5.695e-09	2.52
chr6:166039751	rs73786690	PDE10A	G>T	71	47632	27.48	1.584e-07	1.899
chr6:144188805	rs2328508	AL049844.3	A>G	274	257120	26.81	2.25e-07	1.469
chr3:159946006	rs6791798	AC079594.2	T>C	27	13176	24.94	5.9e-07	2.57
chr12:124250893	rs7316847	DNAH10	C>T	80	57785	24.84	6.215e-07	1.786
chr7:66774346	rs57251152	-	C>T	133	109226	24.75	6.512e-07	1.598
chr3:142629161	rs79287678	-	C>T	26	12951	22.77	1.826e-06	2.508
chr12:128832808	rs1683736	TMEM132C	C>T	67	47157	22.59	2.007e-06	1.82
chr6:24956851	rs651469	RIPOR2	A>G	97	75680	22.46	2.143e-06	1.663
chr4:154832776	rs9992080	-	T>G	41	24606	22.08	2.61e-06	2.09
chr2:238229550	rs114098180	-	C>A	25	12369	22.07	2.622e-06	2.516
chr3:192289771	rs6781345	FGF12	G>C	24	11678	22.04	2.665e-06	2.558
chr7:124175845	rs1181800	-	A>C	34	19259	21.45	3.635e-06	2.207
chr9:73590591	rs116935867	TRPM3	G>A	21	9711	21.41	3.705e-06	2.677
chr11:32278371	rs12271917	-	C>A	38	22489	21.22	4.102e-06	2.114
chr4:154867947	rs11935708	-	A>G	40	24295	21.18	4.17e-06	2.079
chr2:187698751	rs7559533	ZSWIM2	G>A	174	284321	21.09	4.38e-06	0.6761
chr15:42167089	rs61746225	SPTBN5	T>C	32	17999	21.08	4.394e-06	2.242
chr2:206254399	rs116180832	PARD3B	C>T	39	23301	21.07	4.429e-06	2.091

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation
HP: 0003282	Low alkaline phosphatase	19/20
HP: 0004852	Reduced leukocyte alkaline phosphatase	19/20
HP: 0031863	Bloodstream infectious agent	1/20
HP: 0031864	Bacteremia	1/20

Name

Top Correlation

19/20

19/20

1/20

1/20

ID	Name	Top Correlation
HP: 0000118	Phenotypic abnormality	0/20
HP: 0001939	Abnormality of metabolism/homeostasis	0/20
HP: 0002086	Abnormality of the respiratory system	0/20
HP: 0002088	Abnormal lung morphology	0/20
HP: 0002090	Pneumonia	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0002795	Functional respiratory abnormality	0/20
HP: 0004379	Abnormality of alkaline phosphatase activity	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011947	Respiratory tract infection	0/20
HP: 0012252	Abnormal respiratory system morphology	0/20
HP: 0012379	Abnormal enzyme/coenzyme activity	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0025044	Lung abscess	0/20
HP: 0025615	Abscess	0/20
HP: 0030829	Abnormal breath sound	0/20
HP: 0030830	Crackles	0/20
HP: 0031996	Inspiratory crackles	0/20
HP: 0031998	Late inspiratory crackles	0/20
HP: 0032251	Abnormal immune system morphology	0/20

Name

Top Correlation

0/20

0/20

0/20