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ICD-10
HPO
Compare GWAS
Super Class
Pneumonia, organism unspecified
Sub Class
Pneumonia, unspecified
J18.9
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
5716
454489
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr6:32020512
rs17207895
TNXB
T>C
111
13978
24.69
6.723e-07
0.6241
chr3:195838160
rs77176301
-
T>C
271
29076
24.67
6.788e-07
0.7368
chr11:22373951
rs79330667
SLC17A6
T>C
627
41175
24.43
7.691e-07
1.226
chr3:181785515
rs11706418
-
G>A
4433
332770
24.09
9.208e-07
1.098
chr4:140462426
rs72726578
SETD7
G>C
1841
162693
23.02
1.607e-06
0.8851
chr3:195823788
rs3887716
-
C>T
280
29580
22.91
1.694e-06
0.7484
chr2:135911422
Affx-17900027
RAB3GAP1
T>C
2757
237855
22.6
1.995e-06
0.9016
chr22:22464997
rs9611037
-
G>A
364
22677
22.45
2.155e-06
1.289
chr13:59294534
rs80145311
-
T>C
229
13357
22.45
2.159e-06
1.374
chr7:128764737
rs77506340
-
C>T
1471
104409
22.3
2.331e-06
1.141
chr12:106047204
rs11112636
-
G>A
1556
138768
22.13
2.546e-06
0.8795
chr1:245223608
rs74321246
EFCAB2
G>T
305
18626
21.89
2.893e-06
1.313
chr3:70327391
rs9682662
MDFIC2
T>A
216
23530
21.58
3.4e-06
0.7268
chr16:4256463
rs868511
SRL
T>C
2263
196605
20.25
6.787e-06
0.8998
chr2:136407479
rs1446585
R3HDM1
A>G
3082
263324
20.12
7.256e-06
0.9101
chr17:42193185
rs228769
HDAC5
C>G
2405
207905
19.63
9.376e-06
0.9035
chr3:70332780
rs13317022
MDFIC2
G>T
229
24479
19.62
9.423e-06
0.7439
chr3:193931979
rs4078031
-
T>G
651
61380
19.62
9.424e-06
0.8359
chr16:28531287
rs4787458
-
A>G
4372
329608
19.62
9.452e-06
1.089
chr12:106035444
rs4511375
-
C>T
3184
237017
19.6
9.557e-06
1.096
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
2/20
HP: 0002086
Abnormality of the respiratory system
2/20
HP: 0002088
Abnormal lung morphology
2/20
HP: 0002090
Pneumonia
2/20
HP: 0002093
Respiratory insufficiency
1/20
HP: 0002643
Neonatal respiratory distress
5/20
HP: 0006530
Interstitial pulmonary abnormality
2/20
HP: 0010978
Abnormality of immune system physiology
1/20
HP: 0011121
Abnormality of skin morphology
1/20
HP: 0011945
Bronchiolitis obliterans organizing pneumonia
5/20
HP: 0011947
Respiratory tract infection
2/20
HP: 0012252
Abnormal respiratory system morphology
2/20
HP: 0012282
Morbilliform rash
8/20
HP: 0012387
Bronchitis
2/20
HP: 0012388
Acute bronchitis
2/20
HP: 0031691
Severe viral infection
4/20
HP: 0032101
Unusual infection
1/20
HP: 0032169
Severe infection
5/20
ID
Name
Top Correlation
HP: 0000951
Abnormality of the skin
0/20
HP: 0000988
Skin rash
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0011122
Abnormality of skin physiology
0/20
HP: 0011123
Inflammatory abnormality of the skin
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20