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ICD-10
HPO
Compare GWAS
Super Class
Pneumonia, organism unspecified
Sub Class
Pneumonia, unspecified
J18.9
Female
ⓘ
Male
ⓘ
Links
Ignore Sex
Interactive Plot
Statistics
Female Case
Female Control
% Female
2408
247455
42%
Male Case
Male Control
% Male
3308
207034
58%
Top SNP Information
Show Female
Show Male
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr9:7771091
rs10739142
-
G>A
2041
192882
26.77
2.288e-07
1.161
chr12:106035444
rs4511375
-
C>T
1398
128812
24.15
8.918e-07
1.168
chr3:115565703
rs116536874
LSAMP
G>A
131
8884
23.54
1.223e-06
1.536
chr14:68905974
rs11158743
RAD51B
C>T
578
71741
22.45
2.157e-06
0.8107
chr6:34263743
rs10947494
NUDT3
G>A
2292
254710
22.22
2.437e-06
0.8749
chr6:33991692
rs74695365
GRM4
G>A
103
6782
21.08
4.4e-06
1.579
chr14:95796001
rs8005008
-
T>C
894
105834
20.64
5.555e-06
0.8454
chr1:88271804
rs115414657
-
G>T
250
19553
19.86
8.34e-06
1.336
chr6:109036322
rs113491231
-
G>A
96
6291
19.69
9.111e-06
1.579
chr18:14210730
rs17704855
-
C>T
544
46797
19.62
9.432e-06
1.224
chr3:26703680
rs79571228
LRRC3B
C>T
175
13012
19.28
1.126e-05
1.403
chr12:104226437
rs117653415
NT5DC3
A>G
237
18490
19.14
1.217e-05
1.339
chr15:54532370
rs36052891
UNC13C
T>C
117
8100
19.12
1.229e-05
1.505
chr1:203584850
rs6593903
-
T>C
494
61400
19.09
1.244e-05
0.8127
chr8:120860804
rs75635055
DSCC1
C>A
321
26103
19.09
1.249e-05
1.288
chr16:55626605
rs11644713
-
C>T
378
31375
18.8
1.451e-05
1.262
chr22:26427848
rs5752257
-
C>T
307
24895
18.69
1.534e-05
1.291
chr1:195145840
rs72736518
-
T>C
94
6256
18.38
1.813e-05
1.562
chr21:27777822
rs2830201
-
T>C
538
65969
18.18
2.009e-05
0.8228
chr13:90622455
rs2882281
-
C>G
2410
233778
18.11
2.09e-05
1.129
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds ratio
chr11:22373951
rs79330667
SLC17A6
T>C
391
18739
29.15
6.703e-08
1.327
chr8:119772593
rs117522264
-
C>T
142
5771
26.72
2.352e-07
1.553
chr15:94057384
rs72758072
-
A>C
595
30460
25.9
3.597e-07
1.246
chr21:39096139
rs73206011
KCNJ6
C>T
1687
94861
24.55
7.246e-07
1.15
chr11:112653997
rs1447462
-
A>G
650
33793
24.33
8.115e-07
1.227
chr13:59294534
rs80145311
-
T>C
146
6113
23.82
1.055e-06
1.507
chr13:58772655
rs116911449
-
G>T
159
6861
22.37
2.254e-06
1.464
chr1:244709727
rs76291596
CATSPERE
G>A
137
5737
22.32
2.31e-06
1.506
chr13:28058404
rs7336332
-
A>G
1129
62242
21.39
3.751e-06
1.164
chr13:28022267
rs117947621
MTIF3
T>C
1067
58475
21.37
3.79e-06
1.168
chr14:96738473
rs11621078
-
G>A
3455
204716
21.08
4.401e-06
1.119
chr3:69181255
rs111619881
-
A>G
164
7190
20.92
4.78e-06
1.438
chr12:10023591
rs4270003
-
A>C
1472
82740
20.63
5.566e-06
1.144
chr4:81731397
rs28477420
CFAP299
G>C
452
23045
20.2
6.98e-06
1.247
chr16:4256463
rs868511
SRL
T>C
1280
89918
20.08
7.42e-06
0.8698
chr16:4258585
rs11642970
SRL
G>C
1438
100117
20.07
7.453e-06
0.8751
chr6:63977439
rs72872987
-
C>A
131
5571
19.74
8.877e-06
1.483
chr3:181785515
rs11706418
-
G>A
2608
152366
19.61
9.509e-06
1.117
chr11:37475104
rs10160522
-
T>C
3098
182683
19.53
9.926e-06
1.113
chr10:107680866
rs10884242
-
C>T
1704
97214
19.45
1.032e-05
1.132
Associated Phenotypes
ⓘ
Shared SNP phenotype
No shared SNP phenotype
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
2/20
HP: 0002086
Abnormality of the respiratory system
2/20
HP: 0002088
Abnormal lung morphology
2/20
HP: 0002090
Pneumonia
2/20
HP: 0002093
Respiratory insufficiency
1/20
HP: 0002643
Neonatal respiratory distress
5/20
HP: 0006530
Interstitial pulmonary abnormality
2/20
HP: 0010978
Abnormality of immune system physiology
1/20
HP: 0011121
Abnormality of skin morphology
1/20
HP: 0011945
Bronchiolitis obliterans organizing pneumonia
5/20
HP: 0011947
Respiratory tract infection
2/20
HP: 0012252
Abnormal respiratory system morphology
2/20
HP: 0012282
Morbilliform rash
8/20
HP: 0012387
Bronchitis
2/20
HP: 0012388
Acute bronchitis
2/20
HP: 0031691
Severe viral infection
4/20
HP: 0032101
Unusual infection
1/20
HP: 0032169
Severe infection
5/20
ID
Name
Top Correlation
HP: 0000951
Abnormality of the skin
0/20
HP: 0000988
Skin rash
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0011122
Abnormality of skin physiology
0/20
HP: 0011123
Inflammatory abnormality of the skin
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20