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ICD-10
HPO
Compare GWAS
Super Class
Chronic diseases of tonsils and adenoids
Sub Class
Chronic tonsillitis
J35.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
517
459688
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr5:32921940
rs72744641
-
T>G
41
14980
31.66
1.84e-08
2.383
chr7:38331504
rs1860521
-
C>T
45
17876
28.03
1.197e-07
2.194
chr5:33951693
rs16891982
SLC45A2
G>C
123
66938
27.16
1.871e-07
1.637
chr15:92258977
rs12438988
-
G>C
33
11877
26.46
2.696e-07
2.414
chr7:1248880
rs1568773
-
A>G
81
39753
26.45
2.71e-07
1.795
chr20:31474871
rs6141843
EFCAB8
G>A
456
319855
25.51
4.398e-07
1.356
chr3:175554379
rs9872719
-
G>A
302
200834
23.95
9.877e-07
1.387
chr9:122364808
rs113903135
-
C>G
33
12460
23.5
1.251e-06
2.3
chr2:97200810
rs56025514
-
T>G
85
43841
23.21
1.449e-06
1.711
chr2:105959592
rs28930676
C2orf49
G>A
84
43182
23.05
1.576e-06
1.713
chr8:49457532
rs16937767
-
C>T
246
159331
22.04
2.675e-06
1.4
chr6:150328247
rs61289929
-
A>C
43
18363
21.86
2.927e-06
2.04
chr10:31515132
rs2484990
-
C>T
51
23041
21.82
2.995e-06
1.931
chr5:89576758
rs2943029
-
G>T
48
21351
21.56
3.434e-06
1.96
chr3:35483706
rs73066679
-
T>C
32
12412
21.09
4.372e-06
2.232
chr6:3185712
rs7754077
-
C>T
43
18629
20.94
4.745e-06
2.01
chr10:31495974
rs1250307
-
A>G
50
22722
20.92
4.791e-06
1.917
chr10:31512098
rs2484992
-
C>T
50
22859
20.77
5.171e-06
1.913
chr3:31720982
rs12636964
OSBPL10
A>G
90
48277
20.7
5.368e-06
1.641
chr2:233987114
rs9288685
INPP5D
C>T
646
485264
20.63
5.565e-06
1.311
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
1/20
HP: 0001739
Abnormality of the nasopharynx
1/20
HP: 0002788
Recurrent upper respiratory tract infections
1/20
HP: 0011122
Abnormality of skin physiology
1/20
HP: 0011123
Inflammatory abnormality of the skin
1/20
HP: 0025521
Increased body fat percentage
20/20
HP: 0030812
Enlarged tonsils
2/20
HP: 0031458
Adenoiditis
1/20
HP: 0100776
Recurrent pharyngitis
2/20
HP: 3000033
Abnormality of nasopharyngeal adenoids
1/20
ID
Name
Top Correlation
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000366
Abnormality of the nose
0/20
HP: 0000600
Abnormality of the pharynx
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001507
Growth abnormality
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001581
Recurrent skin infections
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002088
Abnormal lung morphology
0/20
HP: 0002205
Recurrent respiratory infections
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002718
Recurrent bacterial infections
0/20
HP: 0002719
Recurrent infections
0/20
HP: 0005406
Recurrent bacterial skin infections
0/20
HP: 0010978
Abnormality of immune system physiology
0/20
HP: 0011110
Tonsillitis
0/20
HP: 0011132
Chronic furunculosis
0/20
HP: 0011947
Respiratory tract infection
0/20
HP: 0012252
Abnormal respiratory system morphology
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20
HP: 0020096
Recurrent streptococcal infections
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025439
Pharyngitis
0/20
HP: 0032101
Unusual infection
0/20
HP: 0100763
Abnormality of the lymphatic system
0/20
HP: 0100765
Abnormality of the tonsils
0/20