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ICD-10
HPO
Compare GWAS
Super Class
Chronic diseases of tonsils and adenoids
Sub Class
Hypertrophy of tonsils
J35.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
307
459898
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr20:53801129
rs6092078
-
G>A
31
15296
38.15
6.539e-10
2.953
chr22:49528017
rs117365539
-
G>A
27
14032
29.98
4.355e-08
2.801
chr17:75540158
rs73997920
-
C>T
26
13302
29.49
5.625e-08
2.827
chr17:3387899
rs9904168
SPATA22
T>C
234
245172
28.4
9.843e-08
1.531
chr10:78159195
rs11001770
LRMDA
G>A
59
43554
27.18
1.857e-07
2.006
chr5:52812695
rs10038146
-
C>T
52
36562
27.15
1.878e-07
2.086
chr6:124643640
rs2626123
NKAIN2
G>C
231
244000
26.98
2.055e-07
1.517
chr5:33951116
rs35397
SLC45A2
T>G
102
90009
25.72
3.94e-07
1.713
chr5:33958959
rs28777
SLC45A2
A>C
71
56924
24.89
6.07e-07
1.851
chr10:78155142
rs749128
LRMDA
T>C
58
43935
24.64
6.897e-07
1.953
chr1:172188062
rs650169
DNM3
C>T
39
25661
24.6
7.07e-07
2.219
chr1:186872282
rs60979573
PLA2G4A
A>G
24
12954
24.23
8.537e-07
2.674
chr14:92242032
rs4243690
CATSPERB
G>A
44
30463
24.12
9.072e-07
2.113
chr10:78158903
rs11001769
LRMDA
T>C
53
39893
22.86
1.746e-06
1.957
chr5:33951693
rs16891982
SLC45A2
G>C
79
66982
22.61
1.983e-06
1.753
chr6:124601652
rs74433145
NKAIN2
C>G
108
99168
22.59
2.003e-06
1.638
chr8:110328051
rs78796332
NUDCD1
G>A
61
48135
22.37
2.254e-06
1.867
chr3:179457790
rs11918373
USP13
C>T
21
11052
22.36
2.259e-06
2.735
chr12:77217193
rs17814011
ZDHHC17
T>C
89
78101
22.02
2.695e-06
1.694
chr4:54150777
rs28524754
SCFD2
G>A
69
56677
22.01
2.711e-06
1.799
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000172
Abnormality of the uvula
2/20
HP: 0001739
Abnormality of the nasopharynx
1/20
HP: 0002011
Morphological central nervous system abnormality
2/20
HP: 0002360
Sleep disturbance
3/20
HP: 0002781
Upper airway obstruction
2/20
HP: 0002870
Obstructive sleep apnea
1/20
HP: 0008438
Vertebral arch anomaly
2/20
HP: 0025267
Snoring
3/20
HP: 0030812
Enlarged tonsils
4/20
HP: 0031458
Adenoiditis
2/20
HP: 3000033
Abnormality of nasopharyngeal adenoids
2/20
ID
Name
Top Correlation
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000174
Abnormal palate morphology
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000366
Abnormality of the nose
0/20
HP: 0000600
Abnormality of the pharynx
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000925
Abnormality of the vertebral column
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002104
Apnea
0/20
HP: 0002143
Abnormality of the spinal cord
0/20
HP: 0002414
Spina bifida
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002793
Abnormal pattern of respiration
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0003298
Spina bifida occulta
0/20
HP: 0003312
Abnormal form of the vertebral bodies
0/20
HP: 0003468
Abnormal vertebral morphology
0/20
HP: 0004614
Spina bifida occulta at S1
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0010301
Spinal dysraphism
0/20
HP: 0010535
Sleep apnea
0/20
HP: 0010810
Long uvula
0/20
HP: 0011110
Tonsillitis
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025439
Pharyngitis
0/20
HP: 0031816
Abnormal oral morphology
0/20
HP: 0045005
Neural tube defect
0/20
HP: 0100736
Abnormal soft palate morphology
0/20
HP: 0100763
Abnormality of the lymphatic system
0/20
HP: 0100765
Abnormality of the tonsils
0/20
HP: 0410043
Abnormal neural tube morphology
0/20