Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Other chronic obstructive pulmonary disease
Sub Class
Chronic obstructive pulmonary disease, unspecified
J44.9
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
10895
449310
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:48426484
rs1426654
SLC24A5
A>G
289
27237
199.9
2.202e-45
0.4411
chr15:48392165
rs1834640
-
A>G
389
31235
169.3
1.047e-38
0.518
chr1:159174683
rs2814778
ACKR1
T>C
193
19184
151.6
7.725e-35
0.4201
chr5:33958959
rs28777
SLC45A2
A>C
894
56101
148.1
4.49e-34
0.6599
chr5:33951693
rs16891982
SLC45A2
G>C
1095
65966
147.2
7.258e-34
0.6861
chr6:136480972
rs9483910
PDE7B
C>T
233
21139
144.6
2.653e-33
0.4599
chr2:66725070
rs12995572
MEIS1
G>C
345
26806
133.8
6.104e-31
0.5371
chr1:173579034
rs12065033
AL139142.2
C>T
144
15197
130.3
3.604e-30
0.3964
chr5:147671850
rs7724380
-
G>A
232
19951
123.4
1.132e-28
0.4859
chr8:145639681
rs1871534
SLC39A4
G>C
198
17947
122.1
2.223e-28
0.4613
chr2:171380643
rs34020565
MYO3B
T>G
316
24543
121.9
2.385e-28
0.5381
chr9:127267689
rs3814134
NR5A1
A>G
398
28808
120.2
5.862e-28
0.5762
chr17:29298304
rs7225888
RNF135
C>G
231
19704
119.7
7.319e-28
0.4903
chr17:29290106
rs55861543
-
C>T
246
20513
119.0
1.044e-27
0.5016
chr5:147863034
rs9325101
HTR4
A>G
177
16563
118.8
1.188e-27
0.4471
chr17:29350769
rs8073072
-
T>G
336
25370
117.9
1.783e-27
0.5531
chr9:140957557
rs11137360
CACNA1B
A>G
254
20752
115.6
5.888e-27
0.5117
chr2:226686177
rs7581591
-
T>C
233
19602
115.4
6.385e-27
0.4978
chr5:147666044
rs7707813
-
T>C
216
18547
114.2
1.167e-26
0.487
chr13:113979972
Affx-80297025
GRTP1
A>ACACT
115
12592
112.8
2.443e-26
0.3829
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
3/20
HP: 0000152
Abnormality of head or neck
2/20
HP: 0000205
Pursed lips
20/20
HP: 0000234
Abnormality of the head
2/20
HP: 0001025
Urticaria
11/20
HP: 0001626
Abnormality of the cardiovascular system
1/20
HP: 0002086
Abnormality of the respiratory system
2/20
HP: 0002088
Abnormal lung morphology
2/20
HP: 0002094
Dyspnea
2/20
HP: 0002097
Emphysema
14/20
HP: 0002597
Abnormality of the vasculature
1/20
HP: 0004469
Chronic bronchitis
12/20
HP: 0006510
Chronic obstructive pulmonary disease
14/20
HP: 0006536
Obstructive lung disease
12/20
HP: 0011121
Abnormality of skin morphology
5/20
HP: 0011276
Vascular skin abnormality
4/20
HP: 0011338
Abnormality of mouth shape
9/20
HP: 0011354
Generalized abnormality of skin
1/20
HP: 0012252
Abnormal respiratory system morphology
2/20
HP: 0012387
Bronchitis
6/20
HP: 0410134
Physical urticaria
12/20
HP: 0410135
Cold urticaria
17/20
ID
Name
Top Correlation
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0011947
Respiratory tract infection
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20
HP: 0032016
Abnormal sputum
0/20
HP: 0032017
Sputum eosinophilia
0/20