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ICD-10
HPO
Compare GWAS
Super Class
Other diseases of intestine
Sub Class
Polyp of colon
K63.5
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
16429
443776
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr18:46453463
rs4939827
SMAD7
T>C
15892
460225
103.4
2.686e-24
0.894
chr20:60968596
rs1570027
CABLES2
A>G
7005
213170
101.9
5.928e-24
0.8717
chr20:60921044
rs4925386
LAMA5
C>T
10456
307779
84.89
3.148e-20
0.896
chr20:60920700
rs6143035
LAMA5
T>C
7798
232603
78.25
9.074e-19
0.8907
chr20:60898244
rs57627107
LAMA5
A>G
7247
215790
67.67
1.934e-16
0.8952
chr5:33951693
rs16891982
SLC45A2
G>C
1989
65072
67.4
2.216e-16
0.8251
chr20:60899182
rs11698080
LAMA5
C>T
6960
207108
66.52
3.468e-16
0.8942
chr20:60958651
rs11699160
-
T>C
11981
347714
65.75
5.121e-16
0.9108
chr5:33958959
rs28777
SLC45A2
A>C
1674
55321
62.66
2.453e-15
0.8179
chr5:147671850
rs7724380
-
G>A
509
19674
61.43
4.587e-15
0.7028
chr8:117630683
rs16892766
-
A>C
3160
75540
58.54
1.989e-14
1.157
chr17:58508582
rs8071181
C17orf64
G>A
372
15045
57.52
3.351e-14
0.6719
chr5:147666044
rs7707813
-
T>C
473
18290
57.32
3.703e-14
0.7024
chr15:48392165
rs1834640
-
A>G
873
30751
57.14
4.068e-14
0.7695
chr1:159174683
rs2814778
ACKR1
T>C
494
18883
56.0
7.256e-14
0.7104
chr7:46919215
rs6463354
-
G>A
13880
360695
54.19
1.818e-13
1.086
chr15:33022090
rs35330276
GREM1
G>A
6963
175528
53.7
2.33e-13
1.105
chr15:48426484
rs1426654
SLC24A5
A>G
751
26775
53.59
2.467e-13
0.7611
chr14:99587529
rs10145157
-
T>C
417
16264
53.0
3.343e-13
0.6968
chr17:58506748
rs57928695
C17orf64
C>T
216
9631
52.28
4.824e-13
0.6102
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
3/20
HP: 0000152
Abnormality of head or neck
2/20
HP: 0000234
Abnormality of the head
2/20
HP: 0002034
Abnormality of the rectum
7/20
HP: 0002242
Abnormal intestine morphology
4/20
HP: 0002250
Abnormal large intestine morphology
6/20
HP: 0002664
Neoplasm
3/20
HP: 0005227
Adenomatous colonic polyposis
20/20
HP: 0005266
Intestinal polyp
8/20
HP: 0007378
Neoplasm of the gastrointestinal tract
8/20
HP: 0008069
Neoplasm of the skin
2/20
HP: 0010284
Intra-oral hyperpigmentation
18/20
HP: 0011024
Abnormality of the gastrointestinal tract
4/20
HP: 0011793
Neoplasm by anatomical site
3/20
HP: 0011830
Abnormal oral mucosa morphology
1/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
3/20
HP: 0012732
Anorectal anomaly
6/20
HP: 0012737
Small intestinal polyp
20/20
HP: 0030255
Large intestinal polyposis
14/20
HP: 0032225
Perifollicular fibroma
20/20
HP: 0100273
Neoplasm of the colon
12/20
HP: 0100669
Abnormal pigmentation of the oral mucosa
18/20
HP: 0100743
Neoplasm of the rectum
16/20
HP: 0100833
Neoplasm of the small intestine
9/20
HP: 0100834
Neoplasm of the large intestine
14/20
HP: 0200008
Intestinal polyposis
8/20
HP: 0200063
Colorectal polyposis
16/20
ID
Name
Top Correlation
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20