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ICD-10
HPO
Compare GWAS
Super Class
Cholecystitis
Sub Class
Chronic cholecystitis
K81.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1632
458573
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr2:44066247
Affx-20090007
ABCG8
G>C
320
62974
48.51
3.289e-12
1.503
chr2:44065090
Affx-20089987
ABCG5
G>A
298
60795
36.97
1.201e-09
1.444
chr2:44073656
rs41360247
ABCG8
T>C
299
61663
34.74
3.762e-09
1.428
chr15:79484487
rs117868581
-
C>T
116
20933
25.73
3.917e-07
1.61
chr6:136511472
rs3799396
PDE7B
A>G
63
33074
24.7
6.683e-07
0.5365
chr17:58508582
rs8071181
C17orf64
G>A
18
15399
24.28
8.313e-07
0.3303
chr5:88474722
rs56368881
-
C>T
271
58247
23.89
1.019e-06
1.362
chr6:136516257
rs7753890
PDE7B
T>C
64
32970
23.51
1.244e-06
0.547
chr5:31918675
rs4867397
PDZD2
A>G
401
91421
23.44
1.289e-06
1.294
chr5:31755661
rs611599
PDZD2
C>T
99
44865
22.26
2.379e-06
0.6205
chr6:20524382
rs761154
-
G>A
1697
447377
22.09
2.599e-06
1.176
chr7:137347299
rs7797609
DGKI
T>C
33
20705
21.73
3.142e-06
0.4516
chr7:32446050
rs423063
PDE1C
A>G
84
39351
21.6
3.364e-06
0.6014
chr17:10994580
rs9902541
-
A>G
31
19863
21.57
3.407e-06
0.4422
chr10:116064528
rs73365341
AFAP1L2
G>A
39
22915
21.46
3.618e-06
0.4817
chr4:56376313
rs1402963
CLOCK
C>T
223
47282
21.44
3.644e-06
1.377
chr1:159174683
rs2814778
ACKR1
T>C
30
19347
21.25
4.038e-06
0.4393
chr14:53479254
rs61094873
-
C>T
61
30970
21.14
4.277e-06
0.5564
chr13:101402224
rs9513794
-
G>T
378
134717
21.07
4.417e-06
0.7786
chr13:113979968
rs200506581
GRTP1
C>CCACA
14
12712
21.05
4.477e-06
0.3126
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000415
Abnormality of the choanae
1/20
HP: 0001082
Cholecystitis
4/20
HP: 0001392
Abnormality of the liver
3/20
HP: 0002012
Abnormality of the abdominal organs
1/20
HP: 0004297
Abnormality of the biliary system
2/20
HP: 0005609
Gallbladder dysfunction
8/20
HP: 0012438
Abnormal gallbladder physiology
4/20
HP: 0012442
Gallbladder dyskinesia
8/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000366
Abnormality of the nose
0/20
HP: 0000453
Choanal atresia
0/20
HP: 0001080
Biliary tract abnormality
0/20
HP: 0001081
Cholelithiasis
0/20
HP: 0005264
Abnormality of the gallbladder
0/20
HP: 0011820
Membranous choanal atresia
0/20
HP: 0012396
Biliary dyskinesia
0/20
HP: 0012437
Abnormal gallbladder morphology
0/20
HP: 0012439
Abnormal biliary tract physiology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20