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ICD-10
HPO
Compare GWAS
Super Class
Intestinal malabsorption
Sub Class
Coeliac disease
K90.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2360
457845
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr6:32165444
Affx-28468489
NOTCH4
A>G
2178
155780
3003.0
0.0
4.327
chr6:32299822
rs1003878
TSBP1
G>A
2388
230627
1756.0
0.0
3.154
chr6:32281688
rs1018430
TSBP1
C>T
2295
231474
1496.0
0.0
2.914
chr6:32281510
rs1018433
TSBP1
A>T
2271
220126
1626.0
0.0
3.036
chr6:32281360
rs1018434
TSBP1
T>C
2271
220124
1627.0
0.0
3.039
chr6:32307532
rs1033499
TSBP1
G>A
2177
179414
2253.0
0.0
3.631
chr6:32412809
rs1041885
HLA-DRA
T>A
2129
169137
2395.0
0.0
3.866
chr6:32148031
rs1062070
RNF5
A>G
2182
186329
2123.0
0.0
3.524
chr6:31604591
rs10885
PRRC2A
C>T
2256
185416
2398.0
0.0
3.767
chr6:31603770
rs11229
PRRC2A
A>G
2299
187195
2474.0
0.0
3.817
chr6:32064726
rs1150752
TNXB
T>C
2009
118964
3839.0
0.0
5.136
chr6:32059867
rs1150753
TNXB
A>G
2016
119037
3860.0
0.0
5.148
chr6:32050758
rs1150754
TNXB
C>T
2130
158465
2703.0
0.0
4.052
chr6:32038550
rs1150755
TNXB
C>T
2122
158413
2685.0
0.0
4.042
chr6:32028149
rs1150758
TNXB
G>C
2120
158401
2672.0
0.0
4.032
chr6:32412005
rs115317719
HLA-DRA
G>T
2241
175448
2607.0
0.0
3.955
chr6:32452707
rs115484013
-
C>T
2259
183502
2432.0
0.0
3.784
chr6:30882415
rs1264304
VARS2
C>T
1839
138604
2213.0
0.0
3.699
chr6:30879987
rs1264308
GTF2H4
C>T
1824
137891
2190.0
0.0
3.688
chr6:30857894
rs1264322
DDR1
G>A
1841
138718
2224.0
0.0
3.708
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0001080
Biliary tract abnormality
17/20
HP: 0001081
Cholelithiasis
19/20
HP: 0001392
Abnormality of the liver
13/20
HP: 0001507
Growth abnormality
15/20
HP: 0001732
Abnormality of the pancreas
18/20
HP: 0001733
Pancreatitis
19/20
HP: 0001734
Annular pancreas
20/20
HP: 0001984
Intolerance to protein
20/20
HP: 0002024
Malabsorption
20/20
HP: 0002027
Abdominal pain
13/20
HP: 0002244
Abnormality of the small intestine
2/20
HP: 0002246
Abnormality of the duodenum
15/20
HP: 0002608
Celiac disease
20/20
HP: 0002720
Decreased circulating IgA level
20/20
HP: 0004297
Abnormality of the biliary system
14/20
HP: 0004313
Decreased antibody level in blood
19/20
HP: 0004323
Abnormality of body weight
16/20
HP: 0004325
Decreased body weight
19/20
HP: 0005236
Chronic calcifying pancreatitis
19/20
HP: 0005264
Abnormality of the gallbladder
19/20
HP: 0005368
Abnormality of humoral immunity
18/20
HP: 0005372
Abnormality of B cell physiology
19/20
HP: 0006557
Polycystic liver disease
19/20
HP: 0006706
Cystic liver disease
19/20
HP: 0010701
Abnormal immunoglobulin level
19/20
HP: 0011017
Abnormal cellular physiology
16/20
HP: 0011458
Abdominal symptom
12/20
HP: 0011472
Abnormality of small intestinal villus morphology
17/20
HP: 0011473
Villous atrophy
17/20
HP: 0012090
Abnormal pancreas morphology
20/20
HP: 0012091
Abnormality of pancreas physiology
19/20
HP: 0012393
Allergy
15/20
HP: 0012396
Biliary dyskinesia
19/20
HP: 0012414
Duodenal atrophy
20/20
HP: 0012437
Abnormal gallbladder morphology
19/20
HP: 0012439
Abnormal biliary tract physiology
19/20
HP: 0012537
Food intolerance
20/20
HP: 0012538
Gluten intolerance
20/20
HP: 0025354
Abnormal cellular phenotype
16/20
HP: 0031071
Abnormal endocrine morphology
17/20
HP: 0031409
Abnormal lymphocyte physiology
19/20
HP: 0045081
Abnormality of body mass index
20/20
HP: 0045082
Decreased body mass index
20/20
HP: 0100326
Immunologic hypersensitivity
1/20
HP: 0410042
Abnormal liver morphology
15/20
HP: 0410240
Abnormal IgA level
20/20
HP: 0410281
Dyspepsia
14/20
HP: 0410329
Gluten allergy
20/20
HP: 0500093
Food allergy
19/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002242
Abnormal intestine morphology
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0010978
Abnormality of immune system physiology
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0012337
Abnormal homeostasis
0/20
HP: 0012531
Pain
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025142
Constitutional symptom
0/20