L29.2

Case	Control
159	460046

Case

Control

159

460046

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr11:61205343	rs112606325	AP003108.2	T>C	20	17164	35.22	2.937e-09	3.6
chr7:11246456	rs113361013	-	G>T	19	17403	29.02	7.166e-08	3.323
chr8:73505366	rs72668137	KCNB2	T>C	21	20265	29.01	7.219e-08	3.16
chr1:236641540	rs11800036	EDARADD	G>C	111	210428	28.95	7.43e-08	1.857
chr20:45823754	rs78648102	-	G>A	15	12354	28.36	1.006e-07	3.714
chr8:73494225	rs72668132	KCNB2	C>A	20	19688	27.23	1.804e-07	3.132
chr2:209355664	rs116336921	PTH2R	A>G	15	13509	24.64	6.898e-07	3.433
chr18:70676680	rs28491374	-	A>G	20	21185	23.62	1.174e-06	2.916
chr11:1680161	rs7119110	-	C>T	45	246595	23.3	1.385e-06	0.4693
chr3:175514007	rs62287273	NAALADL2	T>C	18	18205	23.13	1.512e-06	3.031
chr3:157250945	rs78410286	VEPH1	C>A	12	9830	22.99	1.631e-06	3.724
chr10:10990498	rs116844282	CELF2	T>C	12	9799	22.93	1.68e-06	3.716
chr14:93151596	rs114797792	RIN3	C>A	28	35158	22.62	1.978e-06	2.48
chr17:73179509	rs3940906	-	G>A	12	10032	22.4	2.211e-06	3.668
chr11:112440992	rs111353426	-	A>G	19	20258	21.95	2.803e-06	2.88
chr1:10378270	rs61778373	KIF1B	G>A	22	25349	21.56	3.434e-06	2.677
chr2:127774020	rs114376234	-	T>C	23	27201	21.25	4.034e-06	2.611
chr2:218650869	rs11690390	-	C>T	12	10308	20.97	4.655e-06	3.533
chr12:103009277	rs117825270	-	A>G	17	17542	20.89	4.87e-06	2.959
chr14:95894948	rs68148732	SYNE3	C>A	20	22550	20.44	6.166e-06	2.721

Associated Phenotypes ^ⓘ

Name

Top Correlation

ID	Name	Top Correlation
HP: 0000008	Abnormal morphology of female internal genitalia	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000080	Abnormality of reproductive system physiology	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000142	Abnormal vagina morphology	0/20
HP: 0000812	Abnormal internal genitalia	0/20
HP: 0000951	Abnormality of the skin	0/20
HP: 0000989	Pruritus	0/20
HP: 0001014	Angiokeratoma	0/20
HP: 0001574	Abnormality of the integument	0/20
HP: 0001626	Abnormality of the cardiovascular system	0/20
HP: 0001939	Abnormality of metabolism/homeostasis	0/20
HP: 0001952	Glucose intolerance	0/20
HP: 0002597	Abnormality of the vasculature	0/20
HP: 0002664	Neoplasm	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0004924	Abnormal oral glucose tolerance	0/20
HP: 0007379	Neoplasm of the genitourinary tract	0/20
HP: 0008069	Neoplasm of the skin	0/20
HP: 0010460	Abnormality of the female genitalia	0/20
HP: 0010787	Genital neoplasm	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011014	Abnormal glucose homeostasis	0/20
HP: 0011121	Abnormality of skin morphology	0/20
HP: 0011122	Abnormality of skin physiology	0/20
HP: 0011276	Vascular skin abnormality	0/20
HP: 0011354	Generalized abnormality of skin	0/20
HP: 0011793	Neoplasm by anatomical site	0/20
HP: 0012035	Steatocystoma multiplex	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012337	Abnormal homeostasis	0/20
HP: 0012531	Pain	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0025142	Constitutional symptom	0/20
HP: 0030012	Abnormal female reproductive system physiology	0/20
HP: 0030014	Female sexual dysfunction	0/20
HP: 0030016	Dyspareunia	0/20
HP: 0030416	Vulvar neoplasm	0/20
HP: 0030417	Squamous cell carcinoma of the vulva	0/20
HP: 0030683	Vaginitis	0/20
HP: 0030943	Vulvodynia	0/20
HP: 0032004	Pruritus vulvae	0/20
HP: 0040270	Impaired glucose tolerance	0/20
HP: 0100725	Lichenification	0/20

Name

Top Correlation

HP: 0000008

Abnormal morphology of female internal genitalia

0/20

HP: 0000078

Abnormality of the genital system

0/20

HP: 0000080

Abnormality of reproductive system physiology

0/20

HP: 0000118