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ICD-10
HPO
Compare GWAS
Super Class
Follicular cysts of skin and subcutaneous tissue
Sub Class
Epidermal cyst
L72.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2816
457389
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr3:38051211
rs75495843
PLCD1
G>A
252
28757
35.23
2.924e-09
1.465
chr5:1315660
rs4975616
-
A>G
2274
408552
28.92
7.533e-08
0.8656
chr14:75572265
rs96358
ZC2HC1C
G>A
2421
366164
28.46
9.569e-08
1.152
chr14:75699566
rs60699541
-
C>G
1348
195068
27.67
1.44e-07
1.178
chr5:33951693
rs16891982
SLC45A2
G>C
304
66757
26.95
2.084e-07
0.7369
chr14:75459633
rs175016
-
C>T
2941
454047
25.29
4.935e-07
1.142
chr5:1322087
rs401681
CLPTM1L
C>T
2375
423303
24.95
5.88e-07
0.8754
chr14:75626042
rs910316
TMED10
A>C
2599
459436
24.69
6.733e-07
0.8774
chr14:75538217
rs3742778
ZC2HC1C
G>T
2567
452884
24.52
7.35e-07
0.877
chr14:75532941
rs7156328
ACYP1
T>C
2582
457109
24.21
8.618e-07
0.8783
chr9:19638387
rs72702422
SLC24A2
A>G
376
48392
24.16
8.869e-07
1.3
chr14:75574087
rs10146482
ZC2HC1C
C>T
2592
459258
23.75
1.097e-06
0.8795
chr14:75590822
rs8017642
NEK9
G>A
2590
457740
23.74
1.105e-06
0.8795
chr8:6224113
rs4840859
-
T>G
89
24191
23.03
1.596e-06
0.6017
chr14:75455810
rs175012
-
A>C
2885
445561
22.87
1.732e-06
1.133
chr8:6219368
rs2916694
-
G>T
31
11727
22.83
1.771e-06
0.433
chr14:75671659
rs6574212
-
A>G
2597
458239
22.44
2.165e-06
0.8827
chr16:79138727
rs4888926
WWOX
C>T
1749
316100
22.4
2.219e-06
0.8735
chr6:31783507
rs1043618
HSPA1A
G>C
2097
374895
22.09
2.607e-06
0.8796
chr17:2908162
rs117464358
RAP1GAP2
G>A
171
19824
21.89
2.888e-06
1.437
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000032
Abnormality of male external genitalia
3/20
HP: 0000045
Abnormality of the scrotum
6/20
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000811
Abnormal external genitalia
1/20
HP: 0000951
Abnormality of the skin
1/20
HP: 0001155
Abnormality of the hand
1/20
HP: 0001574
Abnormality of the integument
1/20
HP: 0001747
Accessory spleen
10/20
HP: 0001760
Abnormality of the foot
1/20
HP: 0002011
Morphological central nervous system abnormality
1/20
HP: 0002664
Neoplasm
1/20
HP: 0002814
Abnormality of the lower limb
1/20
HP: 0002817
Abnormality of the upper limb
1/20
HP: 0007446
Palmoplantar blistering
20/20
HP: 0009799
Supernumerary spleens
10/20
HP: 0010461
Abnormality of the male genitalia
3/20
HP: 0011121
Abnormality of skin morphology
2/20
HP: 0011355
Localized skin lesion
2/20
HP: 0011793
Neoplasm by anatomical site
1/20
HP: 0012096
Intracranial epidermoid cyst
19/20
HP: 0025245
Cutaneous cyst
1/20
HP: 0025246
Trichilemmal cyst
1/20
HP: 0025247
Dermoid cyst
10/20
HP: 0025408
Abnormal spleen morphology
1/20
HP: 0030423
Splenic cyst
9/20
HP: 0040064
Abnormality of limbs
1/20
HP: 0040211
Abnormality of the skin of the palm
1/20
HP: 0100848
Neoplasm of the male external genitalia
4/20
HP: 0100849
Neoplasm of the scrotum
12/20
HP: 0100871
Abnormality of the palm
1/20
HP: 0200040
Epidermoid cyst
1/20
ID
Name
Top Correlation
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001743
Abnormality of the spleen
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0010576
Intracranial cystic lesion
0/20
HP: 0010787
Genital neoplasm
0/20
HP: 0011356
Regional abnormality of skin
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0030724
Central nervous system cyst
0/20
HP: 0100763
Abnormality of the lymphatic system
0/20
HP: 0100872
Abnormality of the plantar skin of foot
0/20