Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Atrophic disorders of skin
Sub Class
Lichen sclerosus et atrophicus
L90.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
591
459614
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr6:31421170
rs61591291
-
T>A
38
10213
50.56
1.157e-12
3.051
chr6:31390874
rs115330856
-
C>T
37
10265
45.82
1.295e-11
2.942
chr6:31328416
rs7767850
-
C>T
39
11815
39.73
2.916e-10
2.683
chr6:31367936
rs114817040
MICA
G>A
39
11920
39.08
4.073e-10
2.663
chr6:31096862
rs116772142
PSORS1C1
G>A
33
9773
35.36
2.735e-09
2.74
chr6:32626249
rs6928482
-
T>C
663
449806
32.25
1.356e-08
1.384
chr6:31260364
rs114203148
HLA-B
A>G
36
11674
31.47
2.024e-08
2.504
chr6:31434028
rs73728585
-
G>A
41
14243
30.32
3.661e-08
2.34
chr6:32637016
rs9274697
-
A>G
678
466181
29.88
4.598e-08
1.37
chr1:214008627
rs7515689
-
G>A
319
193384
29.74
4.953e-08
1.424
chr6:32636696
rs28371206
-
G>A
445
288025
27.88
1.294e-07
1.368
chr6:5557350
rs78679882
FARS2
C>T
55
22348
26.49
2.652e-07
2.007
chr6:32657543
rs4642516
-
G>T
674
467169
25.96
3.489e-07
1.34
chr11:103650354
rs118177654
-
A>G
37
13121
25.88
3.629e-07
2.286
chr6:32408057
rs73407187
HLA-DRA
A>G
44
16896
25.02
5.672e-07
2.12
chr6:32670255
rs2856718
-
C>T
513
343676
24.82
6.295e-07
1.334
chr6:32677152
rs16898264
-
G>A
512
341553
24.61
7.031e-07
1.333
chr8:99040492
rs1869611
MATN2
A>G
51
20723
24.51
7.403e-07
2.004
chr15:48392165
rs1834640
-
A>G
9
31615
24.48
7.522e-07
0.2213
chr6:32669767
rs2647050
-
T>C
512
343640
24.41
7.772e-07
1.331
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000036
Abnormality of the penis
4/20
HP: 0000055
Abnormality of female external genitalia
1/20
HP: 0000058
Abnormality of the labia
1/20
HP: 0000063
Fused labia minora
17/20
HP: 0000118
Phenotypic abnormality
1/20
HP: 0000811
Abnormal external genitalia
1/20
HP: 0000924
Abnormality of the skeletal system
1/20
HP: 0001741
Phimosis
7/20
HP: 0003440
Horizontal sacrum
20/20
HP: 0008661
Urethral stenosis
3/20
HP: 0010461
Abnormality of the male genitalia
1/20
HP: 0010787
Genital neoplasm
1/20
HP: 0010936
Abnormality of the lower urinary tract
1/20
HP: 0011121
Abnormality of skin morphology
1/20
HP: 0011842
Abnormality of skeletal morphology
1/20
HP: 0012227
Urethral stricture
3/20
HP: 0012344
Morphea
6/20
HP: 0025414
Pendulous urethral stricture
1/20
HP: 0030417
Squamous cell carcinoma of the vulva
7/20
HP: 0032077
Male urethral meatus stenosis
7/20
HP: 0100587
Abnormality of the preputium
5/20
ID
Name
Top Correlation
HP: 0000032
Abnormality of male external genitalia
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000795
Abnormality of the urethra
0/20
HP: 0000796
Urethral obstruction
0/20
HP: 0000925
Abnormality of the vertebral column
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0001072
Thickened skin
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0002664
Neoplasm
0/20
HP: 0005107
Abnormal sacrum morphology
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0012880
Abnormality of the labia minora
0/20
HP: 0030416
Vulvar neoplasm
0/20
HP: 0032076
Abnormal male urethral meatus morphology
0/20
HP: 0032202
Vulvar intraepithelial neoplasia
0/20