Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Other disorders of skin and subcutaneous tissue, not elsewhere classified
Sub Class
Disorder of skin and subcutaneous tissue, unspecified
L98.9
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
5553
454652
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr5:33951693
rs16891982
SLC45A2
G>C
543
66518
85.15
2.768e-20
0.6672
chr5:33958959
rs28777
SLC45A2
A>C
454
56541
76.4
2.313e-18
0.6589
chr5:33955673
rs35391
SLC45A2
C>T
329
40653
52.36
4.619e-13
0.6679
chr5:33955326
rs35390
SLC45A2
A>C
331
40818
52.21
4.996e-13
0.669
chr5:33951116
rs35397
SLC45A2
T>G
860
89251
43.41
4.449e-11
0.7912
chr15:48426484
rs1426654
SLC24A5
A>G
211
27315
41.7
1.062e-10
0.6397
chr6:396321
rs12203592
IRF4
C>T
2641
198570
38.48
5.535e-10
1.149
chr3:149925742
rs7629443
-
T>C
147
20235
37.45
9.367e-10
0.6038
chr9:117110112
Affx-52344420
AKNA
T>TG
95
14484
35.57
2.456e-09
0.5449
chr12:6968741
rs11064432
USP5
C>G
526
56644
35.2
2.97e-09
0.767
chr4:167455493
rs11941399
-
G>A
608
63872
33.32
7.811e-09
0.7857
chr4:110715473
rs9994162
AC126283.2
C>T
396
43940
33.02
9.119e-09
0.7452
chr5:147863034
rs9325101
HTR4
A>G
119
16621
32.28
1.332e-08
0.5948
chr1:36106253
rs584598
PSMB2
A>G
388
42955
31.9
1.626e-08
0.7468
chr9:1097709
rs12341242
-
T>C
182
22969
31.76
1.742e-08
0.6572
chr15:48392165
rs1834640
-
A>G
267
31357
31.67
1.824e-08
0.7059
chr16:86061671
rs28395189
-
A>G
450
48726
31.13
2.411e-08
0.7643
chr16:90024202
rs8049897
DEF8
G>A
2177
163191
31.01
2.565e-08
1.143
chr1:25555672
rs10903036
SYF2
C>T
91
13522
30.98
2.601e-08
0.5601
chr1:35745141
rs2458890
ZMYM4
C>T
398
43740
30.65
3.092e-08
0.7537
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
4/20
HP: 0000152
Abnormality of head or neck
3/20
HP: 0000234
Abnormality of the head
3/20
HP: 0000271
Abnormality of the face
1/20
HP: 0000282
Facial edema
9/20
HP: 0000598
Abnormality of the ear
3/20
HP: 0000606
Abnormality of the periorbital region
8/20
HP: 0000924
Abnormality of the skeletal system
2/20
HP: 0000951
Abnormality of the skin
1/20
HP: 0000964
Eczema
9/20
HP: 0001051
Seborrheic dermatitis
9/20
HP: 0001574
Abnormality of the integument
1/20
HP: 0001626
Abnormality of the cardiovascular system
2/20
HP: 0001999
Abnormal facial shape
4/20
HP: 0002086
Abnormality of the respiratory system
3/20
HP: 0002597
Abnormality of the vasculature
2/20
HP: 0002664
Neoplasm
4/20
HP: 0002715
Abnormality of the immune system
2/20
HP: 0008069
Neoplasm of the skin
5/20
HP: 0009720
Adenoma sebaceum
13/20
HP: 0010615
Angiofibromas
12/20
HP: 0010622
Neoplasm of the skeletal system
10/20
HP: 0010978
Abnormality of immune system physiology
3/20
HP: 0011121
Abnormality of skin morphology
6/20
HP: 0011122
Abnormality of skin physiology
5/20
HP: 0011123
Inflammatory abnormality of the skin
5/20
HP: 0011355
Localized skin lesion
7/20
HP: 0011792
Neoplasm by histology
1/20
HP: 0011793
Neoplasm by anatomical site
4/20
HP: 0011799
Abnormality of facial soft tissue
4/20
HP: 0011842
Abnormality of skeletal morphology
2/20
HP: 0012337
Abnormal homeostasis
7/20
HP: 0012531
Pain
1/20
HP: 0012647
Abnormal inflammatory response
3/20
HP: 0012649
Increased inflammatory response
3/20
HP: 0025027
Osteoma cutis
12/20
HP: 0025142
Constitutional symptom
2/20
HP: 0030448
Soft tissue sarcoma
2/20
HP: 0030766
Ear pain
7/20
HP: 0031416
Abnormal nasal mucus secretion
1/20
HP: 0031417
Rhinorrhea
1/20
HP: 0031704
Abnormal ear physiology
4/20
HP: 0100242
Sarcoma
2/20
HP: 0100246
Osteoma
13/20
HP: 0100539
Periorbital edema
9/20
HP: 0200036
Skin nodule
9/20
ID
Name
Top Correlation
HP: 0000969
Edema
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0010614
Fibroma
0/20
HP: 0011032
Abnormality of fluid regulation
0/20
HP: 0012316
Fibrous tissue neoplasm
0/20