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ICD-10
HPO
Compare GWAS
Super Class
Other joint disorders, not elsewhere classified
Sub Class
Effusion of joint (Lower leg)
Effusion of joint (Ankle and foot)
Effusion of joint
M25.4
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1893
458312
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr11:129780608
rs73016839
PRDM10
C>T
495
96150
24.49
7.466e-07
1.268
chr14:56343792
rs74054514
-
G>A
554
108693
24.43
7.719e-07
1.254
chr18:55240505
rs1041951
FECH
C>T
509
148849
23.96
9.833e-07
0.793
chr18:75117883
rs72987928
-
T>G
260
46738
22.86
1.742e-06
1.358
chr17:2953418
rs11653675
-
A>G
1410
372288
22.19
2.469e-06
0.856
chr1:65763898
rs10889537
DNAJC6
A>G
1514
396903
21.49
3.56e-06
0.8602
chr17:62578143
rs6504242
SMURF2
C>T
383
73058
21.39
3.739e-06
1.282
chr11:97268928
rs12290029
-
T>C
181
31246
19.89
8.199e-06
1.403
chr7:131642055
rs76545008
-
G>A
112
17702
19.74
8.86e-06
1.528
chr2:17770746
rs1533643
VSNL1
C>T
219
39063
19.7
9.078e-06
1.361
chr1:192618028
rs4658064
RGS13
G>C
324
61087
19.68
9.142e-06
1.293
chr16:2250233
rs9928327
-
G>T
448
87821
19.67
9.184e-06
1.249
chr11:36981889
rs10458904
-
C>T
481
95223
19.26
1.14e-05
1.238
chr2:191217364
rs72917444
INPP1
C>T
170
29240
19.13
1.218e-05
1.408
chr4:136164162
rs17638685
-
A>G
1342
290805
18.93
1.356e-05
1.157
chr18:69543487
rs118110256
-
C>T
73
10567
18.92
1.363e-05
1.665
chr4:732899
rs4690189
PCGF3
T>G
1237
266228
18.68
1.542e-05
1.159
chr2:17708473
rs116356798
-
G>A
128
21029
18.67
1.552e-05
1.473
chr3:195737675
rs9835089
-
T>C
249
45601
18.66
1.56e-05
1.326
chr2:167358750
rs13391876
SCN7A
A>C
89
13573
18.63
1.586e-05
1.584
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000347
Micrognathia
2/20
HP: 0001871
Abnormality of blood and blood-forming tissues
1/20
HP: 0001892
Abnormal bleeding
1/20
HP: 0002692
Hypoplastic facial bones
2/20
HP: 0003778
Short mandibular rami
5/20
HP: 0004885
Episodic respiratory distress
13/20
HP: 0006446
Dysplastic patella
11/20
HP: 0006453
Lateral displacement of the femoral head
13/20
HP: 0009118
Aplasia/Hypoplasia of the mandible
2/20
HP: 0009122
Aplasia/hypoplasia affecting bones of the axial skeleton
1/20
HP: 0100763
Abnormality of the lymphatic system
1/20
HP: 3000003
Abnormal mandibular ramus morphology
5/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000153
Abnormality of the mouth
0/20
HP: 0000163
Abnormal oral cavity morphology
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000277
Abnormality of the mandible
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000929
Abnormal skull morphology
0/20
HP: 0001367
Abnormal joint morphology
0/20
HP: 0001369
Arthritis
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001760
Abnormality of the foot
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002094
Dyspnea
0/20
HP: 0002098
Respiratory distress
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002733
Abnormality of the lymph nodes
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0002813
Abnormality of limb bone morphology
0/20
HP: 0002814
Abnormality of the lower limb
0/20
HP: 0002815
Abnormality of the knee
0/20
HP: 0002823
Abnormality of femur morphology
0/20
HP: 0003028
Abnormality of the ankles
0/20
HP: 0003037
Enlarged joints
0/20
HP: 0003045
Abnormal patella morphology
0/20
HP: 0003095
Septic arthritis
0/20
HP: 0003330
Abnormal bone structure
0/20
HP: 0003366
Abnormality of the femoral neck or head region
0/20
HP: 0003368
Abnormality of the femoral head
0/20
HP: 0005186
Synovial hypertrophy
0/20
HP: 0005261
Joint hemorrhage
0/20
HP: 0005262
Abnormality of the synovia
0/20
HP: 0005930
Abnormality of epiphysis morphology
0/20
HP: 0006499
Abnormality of femoral epiphysis
0/20
HP: 0006500
Abnormality of lower limb epiphysis morphology
0/20
HP: 0006505
Abnormality of limb epiphysis morphology
0/20
HP: 0009115
Aplasia/hypoplasia involving the skeleton
0/20
HP: 0009116
Aplasia/Hypoplasia involving bones of the skull
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0011028
Abnormality of blood circulation
0/20
HP: 0011029
Internal hemorrhage
0/20
HP: 0011314
Abnormality of long bone morphology
0/20
HP: 0011821
Abnormality of facial skeleton
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0011844
Abnormal appendicular skeleton morphology
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025042
Abnormality of mesenteric lymph nodes
0/20
HP: 0025043
Enlarged mesenteric lymph node
0/20
HP: 0030791
Abnormal jaw morphology
0/20
HP: 0031816
Abnormal oral morphology
0/20
HP: 0032063
Ankle joint effusion
0/20
HP: 0032072
Popliteal synovial cyst
0/20
HP: 0040064
Abnormality of limbs
0/20
HP: 0040068
Abnormality of limb bone
0/20
HP: 0040069
Abnormal lower limb bone morphology
0/20
HP: 0100491
Abnormality of lower limb joint
0/20
HP: 0100769
Synovitis
0/20