Home
About
Help
ICD-10
HPO
Compare GWAS
Super Class
Other necrotising vasculopathies
Sub Class
Other giant cell arteritis
M31.6
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
518
459687
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr6:32577973
rs532965
-
T>G
291
180249
49.8
1.699e-12
1.615
chr6:32582650
rs3104413
-
C>G
290
178782
48.02
4.227e-12
1.602
chr6:32581973
rs521539
-
G>A
319
203483
47.02
7.026e-12
1.573
chr6:32577380
rs660895
-
A>G
318
203334
46.66
8.436e-12
1.572
chr6:32583357
rs6931277
-
A>T
281
176414
45.34
1.66e-11
1.593
chr6:32607376
rs34250758
HLA-DQA1
G>A
291
189974
38.76
4.796e-10
1.53
chr6:32402778
rs9268614
-
T>G
321
216141
34.12
5.188e-09
1.472
chr6:32379295
rs9268515
-
G>C
275
180101
33.29
7.925e-09
1.492
chr6:32387809
rs2395163
-
T>C
314
212473
32.44
1.229e-08
1.461
chr6:32565004
rs28366353
-
A>G
529
391693
31.35
2.151e-08
1.403
chr6:32546696
rs3208409
HLA-DRB1
G>A
457
332575
31.18
2.347e-08
1.408
chr6:32375973
rs3763309
-
C>A
313
212774
30.64
3.109e-08
1.446
chr6:32675634
rs9275532
-
C>G
164
97641
30.62
3.14e-08
1.592
chr6:32667850
rs9275356
-
C>G
164
98174
30.24
3.82e-08
1.588
chr6:32681530
rs3957146
-
T>C
164
98088
30.12
4.051e-08
1.586
chr6:32681483
rs7454108
-
T>C
164
98099
30.11
4.076e-08
1.586
chr6:32546879
Affx-28486470
HLA-DRB1
A>G
458
333011
30.09
4.116e-08
1.399
chr6:32371915
rs3793127
BTNL2
C>T
312
213058
29.96
4.418e-08
1.441
chr6:32560934
rs28366302
-
G>C
458
333543
29.91
4.531e-08
1.397
chr6:32376517
rs9268500
-
C>T
92
47637
29.8
4.778e-08
1.799
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0001098
Abnormal fundus morphology
3/20
HP: 0002633
Vasculitis
11/20
HP: 0003565
Elevated erythrocyte sedimentation rate
12/20
HP: 0005310
Large vessel vasculitis
11/20
HP: 0008046
Abnormal retinal vascular morphology
4/20
HP: 0020163
Cilioretinal artery occlusion
10/20
HP: 0025021
Abnormal erythrocyte sedimentation rate
13/20
HP: 0030164
Jaw claudication
11/20
HP: 0100809
Scalp tenderness
11/20
ID
Name
Top Correlation
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000478
Abnormality of the eye
0/20
HP: 0000479
Abnormal retinal morphology
0/20
HP: 0000630
Abnormal retinal artery morphology
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0001965
Abnormality of the scalp
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0004329
Abnormal posterior eye segment morphology
0/20
HP: 0008047
Abnormality of the vasculature of the eye
0/20
HP: 0011004
Abnormal systemic arterial morphology
0/20
HP: 0011025
Abnormal cardiovascular system physiology
0/20
HP: 0012089
Arteritis
0/20
HP: 0012372
Abnormal eye morphology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0025015
Abnormal vascular morphology
0/20
HP: 0025323
Abnormal arterial physiology
0/20
HP: 0025326
Retinal arterial occlusion
0/20
HP: 0030163
Abnormal vascular physiology
0/20
HP: 0030680
Abnormality of cardiovascular system morphology
0/20
HP: 3000036
Abnormality of head blood vessel
0/20