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ICD-10
HPO
Compare GWAS
Super Class
Calculus of lower urinary tract
Sub Class
Calculus in bladder
N21.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
944
459261
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr14:32699698
rs8009215
-
A>G
385
147827
28.36
1.008e-07
1.352
chr8:53318526
rs74744524
ST18
C>T
67
18460
23.49
1.259e-06
1.812
chr17:70985661
rs17183537
SLC39A11
T>C
203
72044
23.42
1.305e-06
1.429
chr7:45030169
rs112520737
-
T>C
153
51812
22.76
1.837e-06
1.491
chr20:3171710
rs8120318
DDRGK1
C>T
309
118112
22.64
1.953e-06
1.342
chr1:200978379
rs35918012
KIF21B
G>C
84
25258
21.61
3.338e-06
1.671
chr1:200964109
rs67134955
KIF21B
C>T
153
52450
21.47
3.597e-06
1.474
chr2:820721
rs12467306
-
T>C
317
197079
20.97
4.658e-06
0.7554
chr5:61162157
rs116260666
-
A>C
85
25757
20.85
4.974e-06
1.652
chr1:47103172
rs1258066
ATPAF1
T>C
7
16215
20.79
5.113e-06
0.2095
chr14:28167643
rs61973813
-
C>T
121
40085
20.37
6.386e-06
1.524
chr6:150328247
rs61289929
-
A>C
10
18396
20.37
6.394e-06
0.2643
chr14:99020853
rs6575676
-
C>T
436
176853
20.33
6.501e-06
1.277
chr15:88625785
rs76154330
NTRK3
C>T
58
16020
20.25
6.795e-06
1.808
chr5:14679972
rs17363494
OTULIN
T>C
489
200752
20.12
7.287e-06
1.263
chr14:99042455
rs17097351
-
A>G
325
126937
19.94
7.973e-06
1.311
chr10:54843940
rs11813347
-
G>A
650
366418
19.64
9.365e-06
0.809
chr19:289047
rs35445548
PLPP2
A>G
71
20954
19.63
9.417e-06
1.699
chr16:83239573
rs113515463
CDH13
G>A
44
11307
19.61
9.521e-06
1.943
chr4:111030075
rs10033229
ELOVL6
T>C
409
244176
19.58
9.667e-06
0.7824
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000008
Abnormal morphology of female internal genitalia
1/20
HP: 0000011
Neurogenic bladder
1/20
HP: 0000015
Bladder diverticulum
1/20
HP: 0000142
Abnormal vagina morphology
1/20
HP: 0000804
Xanthine nephrolithiasis
1/20
HP: 0010461
Abnormality of the male genitalia
1/20
HP: 0010474
Bladder stones
8/20
HP: 0100779
Urogenital sinus anomaly
12/20
ID
Name
Top Correlation
HP: 0000009
Functional abnormality of the bladder
0/20
HP: 0000014
Abnormality of the bladder
0/20
HP: 0000032
Abnormality of male external genitalia
0/20
HP: 0000077
Abnormality of the kidney
0/20
HP: 0000078
Abnormality of the genital system
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000787
Nephrolithiasis
0/20
HP: 0000795
Abnormality of the urethra
0/20
HP: 0000796
Urethral obstruction
0/20
HP: 0000811
Abnormal external genitalia
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0008661
Urethral stenosis
0/20
HP: 0010460
Abnormality of the female genitalia
0/20
HP: 0010935
Abnormality of the upper urinary tract
0/20
HP: 0010936
Abnormality of the lower urinary tract
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0012210
Abnormal renal morphology
0/20
HP: 0012227
Urethral stricture
0/20
HP: 0012243
Abnormal reproductive system morphology
0/20
HP: 0025487
Abnormality of bladder morphology
0/20