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ICD-10
HPO
Compare GWAS
Super Class
Other disorders of kidney and ureter, not elsewhere classified
Sub Class
Cyst of kidney, acquired
N28.1
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
1937
458268
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr3:22331099
rs114187018
ZNF385D
A>G
126
18895
25.78
3.818e-07
1.579
chr16:20317184
rs73541216
-
G>A
172
27680
24.79
6.39e-07
1.472
chr11:129420185
rs2933896
-
G>A
1480
382092
24.45
7.638e-07
0.8516
chr9:137153037
rs944798
-
C>T
486
92324
23.45
1.282e-06
1.263
chr2:235421093
rs78482399
-
C>T
315
56690
23.07
1.56e-06
1.325
chr14:78569962
rs117984759
-
T>C
94
13533
22.77
1.822e-06
1.64
chr19:15311995
rs73926728
-
T>G
95
13762
22.44
2.169e-06
1.63
chr2:11299997
rs11895098
SLC66A3
G>A
931
189484
22.21
2.448e-06
1.192
chr2:128412453
rs35765118
LIMS2
G>A
112
16890
22.03
2.689e-06
1.564
chr10:30264550
rs11007836
-
G>A
103
15355
21.83
2.974e-06
1.59
chr19:15291699
rs57538005
NOTCH3
T>C
101
14952
21.79
3.041e-06
1.596
chr3:51955963
rs76199570
-
A>G
274
48731
21.7
3.193e-06
1.338
chr2:235409692
rs76384797
-
A>G
290
52035
21.61
3.346e-06
1.327
chr17:8752857
rs66895439
PIK3R6
A>G
118
18156
21.29
3.953e-06
1.536
chr19:15291576
rs35769976
NOTCH3
C>G
106
16037
20.73
5.29e-06
1.562
chr2:54599685
rs7567197
C2orf73
G>A
531
102956
20.73
5.294e-06
1.236
chr2:131742728
rs7581517
ARHGEF4
A>G
1112
230790
20.57
5.749e-06
1.172
chr18:4005644
rs9948596
DLGAP1
T>G
78
10976
20.56
5.79e-06
1.673
chr2:54594875
rs4459768
C2orf73
A>G
971
199255
20.54
5.841e-06
1.181
chr4:165702921
rs6832922
SMIM31
T>G
204
34980
20.41
6.235e-06
1.383
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0001317
Abnormal cerebellum morphology
2/20
HP: 0005584
Renal cell carcinoma
13/20
HP: 0006735
Renal cortical adenoma
20/20
HP: 0006766
Papillary renal cell carcinoma
16/20
HP: 0007033
Cerebellar dysplasia
20/20
HP: 0012100
Abnormal circulating creatinine level
2/20
HP: 0012101
Decreased serum creatinine
2/20
HP: 0012581
Solitary renal cyst
5/20
ID
Name
Top Correlation
HP: 0000077
Abnormality of the kidney
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000107
Renal cyst
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0002011
Morphological central nervous system abnormality
0/20
HP: 0002664
Neoplasm
0/20
HP: 0004364
Abnormal circulating nitrogen compound concentration
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0009726
Renal neoplasm
0/20
HP: 0010786
Urinary tract neoplasm
0/20
HP: 0010935
Abnormality of the upper urinary tract
0/20
HP: 0011282
Abnormality of hindbrain morphology
0/20
HP: 0011283
Abnormality of the metencephalon
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0012210
Abnormal renal morphology
0/20
HP: 0012443
Abnormality of brain morphology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0032180
Abnormal circulating metabolite concentration
0/20