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ICD-10
HPO
Compare GWAS
Super Class
Other disorders of bladder
Sub Class
Bladder-neck obstruction
N32.0
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
2356
457849
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr10:22581581
rs116940348
-
G>A
224
28476
40.79
1.696e-10
1.545
chr10:22403894
rs118081660
-
G>C
219
29214
31.51
1.987e-08
1.473
chr11:90754928
rs10765421
-
G>A
1710
297737
27.96
1.238e-07
1.171
chr5:141339763
rs164079
PCDH12
A>C
1487
256794
23.89
1.02e-06
1.164
chr5:1315660
rs4975616
-
A>G
1942
408884
23.63
1.17e-06
0.8684
chr8:3566161
rs10105599
CSMD1
G>T
421
65071
23.01
1.61e-06
1.277
chr9:8192515
rs78069331
-
A>G
147
19289
22.5
2.103e-06
1.486
chr5:1322087
rs401681
CLPTM1L
C>T
2030
423648
21.2
4.147e-06
0.8758
chr5:16578186
rs116054624
RETREG1
C>T
219
31282
20.83
5.02e-06
1.37
chr2:88589280
rs115892436
-
G>C
144
19180
20.49
6.007e-06
1.465
chr17:71024614
rs76963034
SLC39A11
T>G
144
40125
20.3
6.605e-06
0.6843
chr16:86204500
rs72811352
-
C>T
325
49247
20.29
6.644e-06
1.295
chr11:90731784
rs12787172
-
T>C
937
158687
20.25
6.783e-06
1.177
chr16:86213505
rs16940559
-
C>T
669
109776
20.03
7.634e-06
1.205
chr8:3558444
rs2624105
CSMD1
G>A
379
58702
19.93
8.053e-06
1.27
chr5:1342714
rs31489
CLPTM1L
C>A
1873
392435
19.92
8.079e-06
0.8776
chr1:88021391
rs116096955
-
T>C
141
18843
19.83
8.452e-06
1.462
chr1:48203990
rs7544082
-
C>A
1069
232875
19.75
8.834e-06
0.8577
chr19:29098332
rs7250517
-
G>A
67
22049
19.7
9.064e-06
0.5827
chr17:49830970
rs12945752
CA10
C>T
306
46331
19.25
1.148e-05
1.296
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000012
Urinary urgency
3/20
HP: 0000015
Bladder diverticulum
4/20
HP: 0000016
Urinary retention
3/20
HP: 0000022
Abnormality of male internal genitalia
2/20
HP: 0000032
Abnormality of male external genitalia
3/20
HP: 0000078
Abnormality of the genital system
1/20
HP: 0000080
Abnormality of reproductive system physiology
1/20
HP: 0000795
Abnormality of the urethra
1/20
HP: 0000796
Urethral obstruction
3/20
HP: 0008691
Solitary bladder diverticulum
8/20
HP: 0008711
Benign prostatic hyperplasia
1/20
HP: 0008775
Abnormal prostate morphology
2/20
HP: 0010461
Abnormality of the male genitalia
3/20
HP: 0012243
Abnormal reproductive system morphology
1/20
HP: 0012874
Abnormal male reproductive system physiology
4/20
HP: 0012875
Abnormal ejaculation
5/20
HP: 0012877
Retrograde ejaculation
5/20
HP: 0032465
Bladder trabeculation
8/20
HP: 0041047
Bladder outlet obstruction
2/20
ID
Name
Top Correlation
HP: 0000009
Functional abnormality of the bladder
0/20
HP: 0000014
Abnormality of the bladder
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000811
Abnormal external genitalia
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0010936
Abnormality of the lower urinary tract
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0025487
Abnormality of bladder morphology
0/20