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ICD-10
HPO
Compare GWAS
Super Class
Diseases of the genitourinary system
Sub Class
Hyperplasia of prostate
Inflammatory diseases of prostate
Other disorders of prostate
Hydrocele and spermatocele
Orchitis and epididymitis
Redundant prepuce, phimosis and paraphimosis
Other disorders of penis
Inflammatory disorders of male genital organs, not elsewhere classified
Other disorders of male genital organs
Diseases of male genital organs
N40-N51
Case/Control GWAS
ⓘ
Links
Sex Split
Interactive Plot
Statistics
Case
Control
25274
434932
Top SNP Information
Show Table
Location
SNP
Gene
Ref>Alt
Alt in Case
Alt in Control
Chi-square
P-value
Odds Ratio
chr15:48426484
rs1426654
SLC24A5
A>G
1162
26364
84.55
3.739e-20
0.7574
chr5:1322087
rs401681
CLPTM1L
C>T
22221
403458
84.04
4.837e-20
0.9205
chr10:123033549
rs10788160
-
G>A
13898
224492
83.26
7.206e-20
1.097
chr10:123032519
rs11199874
-
G>A
14110
228763
74.76
5.312e-18
1.091
chr5:1315660
rs4975616
-
A>G
21493
389334
73.26
1.137e-17
0.9253
chr5:1342714
rs31489
CLPTM1L
C>A
20598
373710
70.77
4.009e-17
0.9259
chr15:48392165
rs1834640
-
A>G
1404
30220
66.27
3.939e-16
0.7987
chr6:170242949
rs9396958
-
T>C
659
15455
59.83
1.036e-14
0.7346
chr2:26113913
rs78404020
-
A>G
558
13259
55.02
1.194e-13
0.7255
chr10:123025225
rs7915008
-
G>A
13636
222989
54.62
1.459e-13
1.078
chr13:51170755
rs3095527
DLEU7
A>G
10627
172072
54.29
1.733e-13
1.086
chr13:51111355
rs3116602
DLEU7
T>G
11705
190410
53.55
2.526e-13
1.082
chr13:51116901
rs3118914
DLEU7
G>T
11633
189232
53.14
3.099e-13
1.082
chr5:1356684
rs37004
-
C>T
11430
210330
52.8
3.693e-13
0.9243
chr11:44843134
rs11038167
TSPAN18
A>C
403
10046
52.77
3.748e-13
0.6918
chr10:22403894
rs118081660
-
G>C
1886
27547
51.84
6.015e-13
1.19
chr5:1320722
rs402710
CLPTM1L
C>T
17566
317921
51.51
7.107e-13
0.9343
chr18:19902868
rs7240035
-
C>T
22639
377663
50.7
1.073e-12
1.066
chr5:1308552
rs4635969
-
G>A
9796
180916
50.26
1.349e-12
0.9217
chr6:22050187
rs1736507
-
C>A
605
13908
47.58
5.285e-12
0.7504
Associated Phenotypes
ⓘ
Shared SNP phenotypes
No shared SNP phenotypes
ID
Name
Top Correlation
HP: 0000011
Neurogenic bladder
2/20
HP: 0000016
Urinary retention
13/20
HP: 0000017
Nocturia
10/20
HP: 0000022
Abnormality of male internal genitalia
15/20
HP: 0000024
Prostatitis
7/20
HP: 0000031
Epididymitis
5/20
HP: 0000034
Hydrocele testis
2/20
HP: 0000035
Abnormal testis morphology
1/20
HP: 0000041
Chordee
2/20
HP: 0000045
Abnormality of the scrotum
1/20
HP: 0000047
Hypospadias
1/20
HP: 0000078
Abnormality of the genital system
1/20
HP: 0000080
Abnormality of reproductive system physiology
2/20
HP: 0000796
Urethral obstruction
5/20
HP: 0000802
Impotence
1/20
HP: 0003117
Abnormal circulating hormone level
1/20
HP: 0004299
Hernia of the abdominal wall
1/20
HP: 0005943
Respiratory arrest
4/20
HP: 0006543
Cardiorespiratory arrest
4/20
HP: 0008661
Urethral stenosis
3/20
HP: 0008711
Benign prostatic hyperplasia
15/20
HP: 0008775
Abnormal prostate morphology
14/20
HP: 0009714
Abnormality of the epididymis
8/20
HP: 0010461
Abnormality of the male genitalia
5/20
HP: 0010786
Urinary tract neoplasm
2/20
HP: 0010866
Abdominal wall defect
1/20
HP: 0012125
Prostate cancer
1/20
HP: 0012227
Urethral stricture
3/20
HP: 0012243
Abnormal reproductive system morphology
1/20
HP: 0012871
Varicocele
2/20
HP: 0012874
Abnormal male reproductive system physiology
13/20
HP: 0012875
Abnormal ejaculation
14/20
HP: 0012876
Premature ejaculation
3/20
HP: 0012877
Retrograde ejaculation
13/20
HP: 0020126
Prostate mass
2/20
HP: 0030012
Abnormal female reproductive system physiology
15/20
HP: 0030014
Female sexual dysfunction
6/20
HP: 0030087
Abnormal serum testosterone level
1/20
HP: 0030347
Abnormal circulating androgen level
1/20
HP: 0030349
Decreased circulating androgen level
1/20
HP: 0030424
Epididymal cyst
5/20
HP: 0031217
Hot flashes
1/20
HP: 0032076
Abnormal male urethral meatus morphology
1/20
HP: 0040171
Decreased serum testosterone level
1/20
HP: 0041047
Bladder outlet obstruction
12/20
HP: 0045014
Hypolipidemia
1/20
HP: 0100588
Paraphimosis
1/20
HP: 0100627
Displacement of the urethral meatus
1/20
HP: 0100673
Vaginal hydrocele
1/20
HP: 0100787
Prostate neoplasm
1/20
HP: 0100813
Testicular torsion
2/20
ID
Name
Top Correlation
HP: 0000009
Functional abnormality of the bladder
0/20
HP: 0000010
Recurrent urinary tract infections
0/20
HP: 0000014
Abnormality of the bladder
0/20
HP: 0000023
Inguinal hernia
0/20
HP: 0000025
Functional abnormality of male internal genitalia
0/20
HP: 0000027
Azoospermia
0/20
HP: 0000029
Testicular atrophy
0/20
HP: 0000032
Abnormality of male external genitalia
0/20
HP: 0000036
Abnormality of the penis
0/20
HP: 0000050
Hypoplastic male external genitalia
0/20
HP: 0000054
Micropenis
0/20
HP: 0000069
Abnormality of the ureter
0/20
HP: 0000071
Ureteral stenosis
0/20
HP: 0000077
Abnormality of the kidney
0/20
HP: 0000079
Abnormality of the urinary system
0/20
HP: 0000118
Phenotypic abnormality
0/20
HP: 0000119
Abnormality of the genitourinary system
0/20
HP: 0000123
Nephritis
0/20
HP: 0000144
Decreased fertility
0/20
HP: 0000152
Abnormality of head or neck
0/20
HP: 0000234
Abnormality of the head
0/20
HP: 0000245
Abnormality of the paranasal sinuses
0/20
HP: 0000246
Sinusitis
0/20
HP: 0000271
Abnormality of the face
0/20
HP: 0000707
Abnormality of the nervous system
0/20
HP: 0000708
Behavioral abnormality
0/20
HP: 0000789
Infertility
0/20
HP: 0000790
Hematuria
0/20
HP: 0000795
Abnormality of the urethra
0/20
HP: 0000811
Abnormal external genitalia
0/20
HP: 0000812
Abnormal internal genitalia
0/20
HP: 0000834
Abnormality of the adrenal glands
0/20
HP: 0000924
Abnormality of the skeletal system
0/20
HP: 0000929
Abnormal skull morphology
0/20
HP: 0000951
Abnormality of the skin
0/20
HP: 0000969
Edema
0/20
HP: 0000989
Pruritus
0/20
HP: 0000999
Pyoderma
0/20
HP: 0001251
Ataxia
0/20
HP: 0001284
Areflexia
0/20
HP: 0001315
Reduced tendon reflexes
0/20
HP: 0001574
Abnormality of the integument
0/20
HP: 0001581
Recurrent skin infections
0/20
HP: 0001597
Abnormality of the nail
0/20
HP: 0001626
Abnormality of the cardiovascular system
0/20
HP: 0001741
Phimosis
0/20
HP: 0001818
Paronychia
0/20
HP: 0001871
Abnormality of blood and blood-forming tissues
0/20
HP: 0001877
Abnormal erythrocyte morphology
0/20
HP: 0001881
Abnormal leukocyte morphology
0/20
HP: 0001909
Leukemia
0/20
HP: 0001939
Abnormality of metabolism/homeostasis
0/20
HP: 0001977
Abnormal thrombosis
0/20
HP: 0002011
Morphological central nervous system abnormality
0/20
HP: 0002012
Abnormality of the abdominal organs
0/20
HP: 0002031
Abnormal esophagus morphology
0/20
HP: 0002034
Abnormality of the rectum
0/20
HP: 0002063
Rigidity
0/20
HP: 0002084
Encephalocele
0/20
HP: 0002086
Abnormality of the respiratory system
0/20
HP: 0002093
Respiratory insufficiency
0/20
HP: 0002143
Abnormality of the spinal cord
0/20
HP: 0002167
Neurological speech impairment
0/20
HP: 0002242
Abnormal intestine morphology
0/20
HP: 0002250
Abnormal large intestine morphology
0/20
HP: 0002522
Areflexia of lower limbs
0/20
HP: 0002597
Abnormality of the vasculature
0/20
HP: 0002638
Superficial thrombophlebitis
0/20
HP: 0002664
Neoplasm
0/20
HP: 0002715
Abnormality of the immune system
0/20
HP: 0002716
Lymphadenopathy
0/20
HP: 0002718
Recurrent bacterial infections
0/20
HP: 0002719
Recurrent infections
0/20
HP: 0002733
Abnormality of the lymph nodes
0/20
HP: 0002795
Functional respiratory abnormality
0/20
HP: 0002814
Abnormality of the lower limb
0/20
HP: 0002907
Microscopic hematuria
0/20
HP: 0003011
Abnormality of the musculature
0/20
HP: 0003110
Abnormality of urine homeostasis
0/20
HP: 0003119
Abnormal circulating lipid concentration
0/20
HP: 0003241
External genital hypoplasia
0/20
HP: 0003251
Male infertility
0/20
HP: 0003438
Absent Achilles reflex
0/20
HP: 0003549
Abnormality of connective tissue
0/20
HP: 0004298
Abnormality of the abdominal wall
0/20
HP: 0004302
Functional motor deficit
0/20
HP: 0004364
Abnormal circulating nitrogen compound concentration
0/20
HP: 0004377
Hematological neoplasm
0/20
HP: 0004418
Thrombophlebitis
0/20
HP: 0004871
Perineal fistula
0/20
HP: 0004936
Venous thrombosis
0/20
HP: 0005224
Rectal abscess
0/20
HP: 0005406
Recurrent bacterial skin infections
0/20
HP: 0005547
Myeloproliferative disorder
0/20
HP: 0006000
Ureteral obstruction
0/20
HP: 0006827
Atrophy of the spinal cord
0/20
HP: 0007302
Bipolar affective disorder
0/20
HP: 0007344
Atrophy/Degeneration involving the spinal cord
0/20
HP: 0007367
Atrophy/Degeneration affecting the central nervous system
0/20
HP: 0007379
Neoplasm of the genitourinary tract
0/20
HP: 0008069
Neoplasm of the skin
0/20
HP: 0008256
Adrenocortical adenoma
0/20
HP: 0008373
Puberty and gonadal disorders
0/20
HP: 0008669
Abnormal spermatogenesis
0/20
HP: 0008734
Decreased testicular size
0/20
HP: 0008736
Hypoplasia of penis
0/20
HP: 0008940
Generalized lymphadenopathy
0/20
HP: 0009121
Abnormal axial skeleton morphology
0/20
HP: 0009715
Papillary cystadenoma of the epididymis
0/20
HP: 0009725
Bladder neoplasm
0/20
HP: 0010468
Aplasia/Hypoplasia of the testes
0/20
HP: 0010480
Urethral fistula
0/20
HP: 0010785
Gonadal neoplasm
0/20
HP: 0010787
Genital neoplasm
0/20
HP: 0010867
Dyssynergia
0/20
HP: 0010873
Cervical spinal cord atrophy
0/20
HP: 0010876
Abnormal circulating protein level
0/20
HP: 0010935
Abnormality of the upper urinary tract
0/20
HP: 0010936
Abnormality of the lower urinary tract
0/20
HP: 0010978
Abnormality of immune system physiology
0/20
HP: 0010987
Abnormal cellular immune system morphology
0/20
HP: 0011024
Abnormality of the gastrointestinal tract
0/20
HP: 0011032
Abnormality of fluid regulation
0/20
HP: 0011109
Chronic sinusitis
0/20
HP: 0011121
Abnormality of skin morphology
0/20
HP: 0011122
Abnormality of skin physiology
0/20
HP: 0011123
Inflammatory abnormality of the skin
0/20
HP: 0011138
Abnormality of skin adnexa morphology
0/20
HP: 0011277
Abnormality of the urinary system physiology
0/20
HP: 0011355
Localized skin lesion
0/20
HP: 0011356
Regional abnormality of skin
0/20
HP: 0011442
Abnormal central motor function
0/20
HP: 0011443
Abnormality of coordination
0/20
HP: 0011446
Abnormality of higher mental function
0/20
HP: 0011732
Abnormality of adrenal morphology
0/20
HP: 0011793
Neoplasm by anatomical site
0/20
HP: 0011804
Abnormal muscle physiology
0/20
HP: 0011815
Cephalocele
0/20
HP: 0011821
Abnormality of facial skeleton
0/20
HP: 0011842
Abnormality of skeletal morphology
0/20
HP: 0012041
Decreased fertility in males
0/20
HP: 0012130
Abnormal erythroid lineage cell morphology
0/20
HP: 0012211
Abnormal renal physiology
0/20
HP: 0012330
Pyelonephritis
0/20
HP: 0012337
Abnormal homeostasis
0/20
HP: 0012531
Pain
0/20
HP: 0012614
Abnormal urine cytology
0/20
HP: 0012638
Abnormal nervous system physiology
0/20
HP: 0012639
Abnormal nervous system morphology
0/20
HP: 0012647
Abnormal inflammatory response
0/20
HP: 0012649
Increased inflammatory response
0/20
HP: 0012718
Morphological abnormality of the gastrointestinal tract
0/20
HP: 0012719
Functional abnormality of the gastrointestinal tract
0/20
HP: 0012732
Anorectal anomaly
0/20
HP: 0012740
Papilloma
0/20
HP: 0012786
Recurrent cystitis
0/20
HP: 0012878
Retarded ejaculation
0/20
HP: 0012879
Anejaculation
0/20
HP: 0020047
Abnormal myeloid cell morphology
0/20
HP: 0020058
Abnormal red blood cell count
0/20
HP: 0020060
Decreased red blood cell count
0/20
HP: 0025020
Elevated prostate-specific antigen level
0/20
HP: 0025031
Abnormality of the digestive system
0/20
HP: 0025032
Abnormality of digestive system physiology
0/20
HP: 0025033
Abnormality of digestive system morphology
0/20
HP: 0025038
Intratesticular abscess
0/20
HP: 0025142
Constitutional symptom
0/20
HP: 0025245
Cutaneous cyst
0/20
HP: 0025268
Stuttering
0/20
HP: 0025270
Abnormality of esophagus physiology
0/20
HP: 0025452
Pyoderma gangrenosum
0/20
HP: 0025487
Abnormality of bladder morphology
0/20
HP: 0025488
Detrusor sphincter dyssynergia
0/20
HP: 0025615
Abscess
0/20
HP: 0025633
Abnormal ureter morphology
0/20
HP: 0025634
Abnormal ureter physiology
0/20
HP: 0030017
Vaginismus
0/20
HP: 0030155
Scrotal pain
0/20
HP: 0030421
Epididymal neoplasm
0/20
HP: 0030764
Ochronosis
0/20
HP: 0031071
Abnormal endocrine morphology
0/20
HP: 0031188
Genital edema
0/20
HP: 0031466
Impairment in personality functioning
0/20
HP: 0031826
Abnormal reflex
0/20
HP: 0031828
Abnormal superficial reflex
0/20
HP: 0031829
Absent cremaster reflex
0/20
HP: 0031967
Cloudy urine
0/20
HP: 0032020
Eosinophilic bladder infiltration
0/20
HP: 0032077
Male urethral meatus stenosis
0/20
HP: 0032101
Unusual infection
0/20
HP: 0032171
Bladder pain
0/20
HP: 0032180
Abnormal circulating metabolite concentration
0/20
HP: 0032251
Abnormal immune system morphology
0/20
HP: 0040064
Abnormality of limbs
0/20
HP: 0040307
Male sexual dysfunction
0/20
HP: 0045058
Abnormality of the testis size
0/20
HP: 0100022
Abnormality of movement
0/20
HP: 0100518
Dysuria
0/20
HP: 0100568
Neoplasm of the endocrine system
0/20
HP: 0100577
Urinary bladder inflammation
0/20
HP: 0100587
Abnormality of the preputium
0/20
HP: 0100589
Urogenital fistula
0/20
HP: 0100631
Neoplasm of the adrenal gland
0/20
HP: 0100639
Erectile dysfunction
0/20
HP: 0100641
Neoplasm of the adrenal cortex
0/20
HP: 0100754
Mania
0/20
HP: 0100763
Abnormality of the lymphatic system
0/20
HP: 0100790
Hernia
0/20
HP: 0100796
Orchitis
0/20
HP: 0100803
Abnormality of the periungual region
0/20
HP: 0200023
Priapism
0/20
HP: 0200040
Epidermoid cyst
0/20
HP: 0200041
Skin erosion
0/20
HP: 0200042
Skin ulcer
0/20
HP: 0200043
Verrucae
0/20
HP: 0200101
Decreased/absent ankle reflexes
0/20
HP: 0500006
Urethritis
0/20
HP: 0550004
Verruca plana
0/20