N42.0

Case	Control
107	460098

Case

Control

107

460098

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr7:100486285	rs137910416	-	G>T	16	18825	32.57	1.148e-08	3.942
chr7:103583059	rs73183770	RELN	T>C	15	17600	30.63	3.118e-08	3.938
chr16:52640206	rs45587544	-	G>A	19	26348	29.48	5.645e-08	3.406
chr8:96992318	rs16894164	-	C>T	20	29305	27.43	1.629e-07	3.195
chr14:33655557	rs17470464	NPAS3	G>A	27	46635	26.53	2.594e-07	2.757
chr1:156836838	rs2274497	NTRK1	T>C	24	39322	26.37	2.821e-07	2.886
chr22:43456450	rs9611993	TTLL1	C>T	28	50025	26.02	3.378e-07	2.694
chr8:104294211	rs13282967	-	A>G	46	100294	25.99	3.439e-07	2.273
chr2:173806585	rs116082003	RAPGEF4	G>A	15	19588	25.73	3.933e-07	3.561
chr18:59508606	rs116981748	RNF152	C>T	13	16026	24.33	8.1e-07	3.721
chr4:37702059	rs13122883	-	G>T	18	26873	23.73	1.106e-06	3.115
chr1:156830218	rs10908523	NTRK1	T>C	21	34189	23.25	1.425e-06	2.876
chr1:85011584	rs17374753	SPATA1	T>C	37	77977	23.15	1.498e-06	2.322
chr18:58585813	rs62099503	-	G>A	18	27258	23.03	1.592e-06	3.067
chr9:92207451	rs11265832	-	C>T	11	12768	22.77	1.823e-06	3.925
chr10:952443	rs117057090	LARP4B	G>A	15	20904	22.5	2.096e-06	3.308
chr8:104243474	rs34612546	-	G>T	54	131323	22.33	2.3e-06	2.061
chr1:160576892	rs74773374	-	T>C	10	11145	22.17	2.493e-06	4.079
chr8:20829798	rs57224972	-	G>A	41	92301	22.14	2.53e-06	2.214
chr5:171993280	rs10059684	-	T>C	50	118710	22.1	2.584e-06	2.093

Associated Phenotypes ^ⓘ

Name

Top Correlation

ID	Name	Top Correlation
HP: 0000022	Abnormality of male internal genitalia	0/20
HP: 0000024	Prostatitis	0/20
HP: 0000032	Abnormality of male external genitalia	0/20
HP: 0000077	Abnormality of the kidney	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000790	Hematuria	0/20
HP: 0000795	Abnormality of the urethra	0/20
HP: 0000811	Abnormal external genitalia	0/20
HP: 0000812	Abnormal internal genitalia	0/20
HP: 0000951	Abnormality of the skin	0/20
HP: 0001574	Abnormality of the integument	0/20
HP: 0001939	Abnormality of metabolism/homeostasis	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0002907	Microscopic hematuria	0/20
HP: 0003110	Abnormality of urine homeostasis	0/20
HP: 0008711	Benign prostatic hyperplasia	0/20
HP: 0008775	Abnormal prostate morphology	0/20
HP: 0010461	Abnormality of the male genitalia	0/20
HP: 0010480	Urethral fistula	0/20
HP: 0010935	Abnormality of the upper urinary tract	0/20
HP: 0010936	Abnormality of the lower urinary tract	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0011121	Abnormality of skin morphology	0/20
HP: 0011277	Abnormality of the urinary system physiology	0/20
HP: 0012211	Abnormal renal physiology	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012614	Abnormal urine cytology	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0030764	Ochronosis	0/20
HP: 0100589	Urogenital fistula	0/20

Name

Top Correlation

HP: 0000022

Abnormality of male internal genitalia

0/20

HP: 0000024

Prostatitis

0/20

HP: 0000032

Abnormality of male external genitalia

0/20

HP: 0000077