N47

Female Case	Female Control	% Female
3	249861	0%

Male Case	Male Control	% Male
2625	207717	100%

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr4:128443767	rs116586720	-	A>G	3	7253	104.8	1.357e-24	71.88
chr4:127746848	rs74637529	-	C>T	3	7374	102.3	4.716e-24	70.23
chr1:232033335	rs34415717	DISC1	C>T	3	8811	82.77	9.218e-20	57.18
chr12:44354576	rs17627855	TMEM117	C>T	3	9982	73.55	9.835e-18	51.03
chr16:63957163	rs7187613	-	C>T	3	10445	71.37	2.955e-17	49.58
chr1:53758034	rs72673164	LRP8	C>A	3	11041	67.43	2.183e-16	46.94
chr21:42096412	rs79566442	DSCAM	G>C	4	19655	66.42	3.653e-16	51.8
chr17:74560818	rs35049285	AC015802.6	A>G	3	11498	64.51	9.609e-16	44.99
chr5:5319335	rs72647765	ADAMTS16	T>C	3	11652	63.27	1.804e-15	44.17
chr16:25620784	rs11863473	-	G>A	2	5376	62.27	3.001e-15	48.7
chr8:13021011	rs117312903	DLC1	C>T	2	5381	62.16	3.164e-15	48.62
chr14:32827616	rs77073935	AKAP6	T>C	2	5362	61.98	3.47e-15	48.48
chr17:6868562	rs72832786	-	A>C	2	5407	61.85	3.714e-15	48.38
chr8:134072363	rs4486183	TG	G>T	2	5456	61.34	4.809e-15	48.0
chr16:63885474	rs79818334	-	G>A	3	12138	60.89	6.045e-15	42.58
chr14:22479773	rs111992974	-	C>A	2	5525	60.54	7.205e-15	47.4
chr8:134066209	rs2896691	TG	C>T	2	5570	60.0	9.507e-15	46.99
chr6:29232072	rs16894681	-	T>G	3	12330	59.83	1.036e-14	41.87
chr1:245375936	rs115804778	KIF26B	C>T	2	5641	59.22	1.408e-14	46.41
chr8:80347911	rs74332291	-	G>T	2	5682	58.78	1.76e-14	46.08

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds ratio
chr6:31324615	rs1050529	HLA-B	C>T	1774	124179	49.84	1.67e-12	1.23
chr6:31325912	rs9266258	-	T>C	1124	75049	45.72	1.367e-11	1.255
chr6:31352113	rs9266772	-	T>C	1358	92441	45.64	1.418e-11	1.237
chr6:31332239	rs2596551	-	A>C	1281	86857	45.02	1.952e-11	1.24
chr6:31334477	rs9266380	-	G>A	753	48029	44.11	3.104e-11	1.299
chr6:32546912	rs34252386	HLA-DRB1	A>AG	2002	142534	43.19	4.96e-11	1.207
chr6:32492866	rs111834747	HLA-DRB5	C>T	2065	147538	40.31	2.164e-10	1.196
chr6:31321882	Affx-28452186	HLA-B	G>A	1053	70631	39.96	2.593e-10	1.244
chr6:32433167	rs2395185	-	G>T	2126	152546	39.69	2.984e-10	1.192
chr6:32560934	rs28366302	-	G>C	2098	150654	39.13	3.969e-10	1.191
chr6:32546879	Affx-28486470	HLA-DRB1	A>G	2093	150507	38.49	5.511e-10	1.189
chr6:32434349	rs9268969	-	C>T	2146	154574	38.21	6.36e-10	1.187
chr6:32546696	rs3208409	HLA-DRB1	G>A	2089	150200	38.18	6.457e-10	1.189
chr6:32432835	rs9268923	-	C>T	2142	154365	37.95	7.252e-10	1.187
chr6:32546557	rs34839759	HLA-DRB1	C>G	2082	149574	37.77	7.975e-10	1.188
chr6:32429643	rs9268853	-	T>C	2139	153879	37.76	7.99e-10	1.187
chr6:31333303	rs2844580	-	T>C	2466	180204	37.18	1.077e-09	1.182
chr6:32550550	rs28724008	HLA-DRB1	C>G	2137	154159	36.86	1.271e-09	1.184
chr6:31412513	rs2395004	-	G>C	2905	215290	35.39	2.694e-09	1.176
chr6:33043520	rs2071349	HLA-DPA1	C>G	577	58292	35.08	3.164e-09	0.7701

Location

SNP

Gene

Ref>Alt

Alt in Case

Alt in Control

Chi-square

P-value

Odds ratio

chr6:31324615

rs1050529

HLA-B

C>T

1774

124179

49.84

1.67e-12

1.23

chr6:31325912

rs9266258

-

T>C

1124

75049

45.72

1.367e-11

1.255

chr6:31352113

rs9266772

-

T>C

1358

92441

45.64

1.418e-11

1.237

chr6:31332239

rs2596551

-

A>C

1281

86857

45.02

1.952e-11

1.24

chr6:31334477

rs9266380

-

G>A

753

48029

44.11

3.104e-11

1.299

chr6:32546912

rs34252386

HLA-DRB1

A>AG

2002

142534

43.19

4.96e-11

1.207

chr6:32492866

rs111834747

HLA-DRB5

C>T

2065

147538

40.31

2.164e-10

1.196

chr6:31321882

Affx-28452186

HLA-B

G>A

1053

70631

39.96

2.593e-10

1.244

chr6:32433167

rs2395185

-

G>T

2126

152546

39.69

2.984e-10

1.192

chr6:32560934

rs28366302

-

G>C

2098

150654

39.13

3.969e-10

1.191

chr6:32546879

Affx-28486470

HLA-DRB1

A>G

2093

150507

38.49

5.511e-10

1.189

chr6:32434349

rs9268969

-

C>T

2146

154574

38.21

6.36e-10

1.187

chr6:32546696

rs3208409

HLA-DRB1

G>A

2089

150200

38.18

6.457e-10

1.189

chr6:32432835

rs9268923

-

C>T

2142

154365

37.95

7.252e-10

1.187

chr6:32546557

rs34839759

HLA-DRB1

C>G

2082

149574

37.77

7.975e-10

1.188

chr6:32429643

rs9268853

-

T>C

2139

153879

37.76

7.99e-10

1.187

chr6:31333303

rs2844580

-

T>C

2466

180204

37.18

1.077e-09

1.182

chr6:32550550

rs28724008

HLA-DRB1

C>G

2137

154159

36.86

1.271e-09

1.184

chr6:31412513

rs2395004

-

G>C

2905

215290

35.39

2.694e-09

1.176

chr6:33043520

rs2071349

HLA-DPA1

C>G

577

58292

35.08

3.164e-09

0.7701

ID	Name	Top Correlation
HP: 0000036	Abnormality of the penis	11/20
HP: 0100587	Abnormality of the preputium	12/20

ID	Name	Top Correlation
HP: 0000032	Abnormality of male external genitalia	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000811	Abnormal external genitalia	0/20
HP: 0010461	Abnormality of the male genitalia	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20

Redundant prepuce, phimosis and paraphimosis

N47

Female ^ⓘ

Male ^ⓘ

Links

Statistics

Top SNP Information

Associated Phenotypes ^ⓘ

Redundant prepuce, phimosis and paraphimosis

N47

Female ⓘ

Male ⓘ

Links

Statistics

Top SNP Information Show Female Show Male

Associated Phenotypes ⓘ Shared SNP phenotype No shared SNP phenotype

Female ^ⓘ

Male ^ⓘ

Top SNP Information

Associated Phenotypes ^ⓘ