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ICD-10
HPO
Compare GWAS

Super Class
Other disorders of penis
Sub Class

Leukoplakia of penis

N48.0

Case/Control GWAS ^ⓘ

GWAS of N480

Links

Interactive Plot

Statistics

Case	Control
255	459950

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr7:128014107	rs112701331	-	G>A	27	17226	33.48	7.196e-09	2.972
chr1:241280303	rs12024588	RGS7	T>C	139	170005	28.03	1.192e-07	1.679
chr3:84539655	rs12638793	-	C>T	132	161942	25.38	4.716e-07	1.65
chr2:55630251	rs79422941	CCDC88A	T>C	50	46781	25.2	5.164e-07	2.076
chr17:57832190	rs9899611	VMP1	A>G	70	214436	23.89	1.021e-06	0.5394
chr17:57811407	rs9901606	VMP1	A>C	70	214305	23.83	1.055e-06	0.5398
chr2:183643662	rs72898754	DNAJC10	G>A	49	46144	23.6	1.185e-06	2.041
chr17:57892640	rs2173120	VMP1	A>T	68	208737	23.33	1.366e-06	0.5392
chr17:57814641	rs2271304	VMP1	A>G	68	208980	23.32	1.375e-06	0.5393
chr17:57841357	rs1874548	VMP1	A>G	68	208591	23.16	1.488e-06	0.5404
chr17:57942585	rs2526358	TUBD1	A>G	61	192146	22.85	1.75e-06	0.5275
chr17:57965731	rs1296279	TUBD1	G>A	61	191889	22.71	1.887e-06	0.5285
chr17:57951973	rs2250526	TUBD1	G>A	62	193655	22.56	2.041e-06	0.5319
chr17:57976658	rs2526354	RPS6KB1	T>C	62	193547	22.44	2.17e-06	0.5328
chr17:57988607	rs2526353	RPS6KB1	G>T	61	191273	22.43	2.175e-06	0.5305
chr17:58007193	rs2531899	RPS6KB1	G>A	61	190755	22.29	2.34e-06	0.5315
chr9:76225566	rs117418200	-	T>C	35	30103	22.29	2.34e-06	2.236
chr17:57929319	rs1292068	-	T>C	112	296958	22.24	2.411e-06	0.6087
chr17:58024324	rs1051424	RPS6KB1	A>G	61	190750	22.23	2.418e-06	0.532
chr17:58018142	rs72840315	RPS6KB1	G>C	62	192285	22.14	2.537e-06	0.5349

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation

ID	Name	Top Correlation
HP: 0000032	Abnormality of male external genitalia	0/20
HP: 0000036	Abnormality of the penis	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000080	Abnormality of reproductive system physiology	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000802	Impotence	0/20
HP: 0000811	Abnormal external genitalia	0/20
HP: 0000951	Abnormality of the skin	0/20
HP: 0000989	Pruritus	0/20
HP: 0001574	Abnormality of the integument	0/20
HP: 0001741	Phimosis	0/20
HP: 0010461	Abnormality of the male genitalia	0/20
HP: 0011122	Abnormality of skin physiology	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012874	Abnormal male reproductive system physiology	0/20
HP: 0040307	Male sexual dysfunction	0/20
HP: 0100587	Abnormality of the preputium	0/20
HP: 0100639	Erectile dysfunction	0/20