N72

Case	Control
1318	458876

Case

Control

1318

458876

Top SNP Information

Location	SNP	Gene	Ref>Alt	Alt in Case	Alt in Control	Chi-square	P-value	Odds Ratio
chr12:10885863	rs753202	-	T>C	1477	464709	37.52	9.041e-10	1.264
chr12:10885766	rs5796416	-	CG>C	1206	379806	26.56	2.557e-07	1.219
chr3:3256506	rs73011180	-	C>T	190	47008	26.18	3.105e-07	1.467
chr15:87664115	rs8033765	-	T>C	860	346903	22.95	1.659e-06	0.8212
chr14:82887739	rs17668144	-	C>T	1448	469639	21.24	4.049e-06	1.193
chr8:95778058	rs117632870	DPY19L4	C>T	80	17080	21.03	4.52e-06	1.675
chr12:10902579	rs7300727	-	G>A	1085	344573	19.75	8.805e-06	1.19
chr13:28572074	rs77528506	-	G>A	76	16372	19.42	1.051e-05	1.662
chr9:83875344	rs117752201	-	T>C	178	45781	18.88	1.392e-05	1.399
chr4:58015669	rs7663543	-	T>C	899	280888	18.87	1.397e-05	1.193
chr6:11870567	rs74789107	-	C>T	160	40399	18.86	1.408e-05	1.423
chr7:8797737	rs9791719	-	T>G	853	339796	18.82	1.439e-05	0.8362
chr18:5303009	rs613575	-	C>T	447	189805	18.73	1.502e-05	0.7997
chr17:13815448	rs4792415	-	T>C	1060	415237	18.73	1.509e-05	0.8435
chr7:12820880	rs112832920	-	A>T	185	48084	18.66	1.566e-05	1.388
chr6:144268094	rs6930726	PLAGL1	A>C	1147	444669	18.36	1.829e-05	0.847
chr8:6789964	rs79350116	-	T>G	196	51562	18.33	1.854e-05	1.373
chr6:9056678	rs181862022	-	A>G	153	38678	18.05	2.156e-05	1.423
chr10:27062889	rs117346554	ABI1	A>G	78	17251	17.87	2.364e-05	1.619
chr5:149907602	rs2273234	NDST1	A>G	1358	441651	17.59	2.736e-05	1.174

Associated Phenotypes ^ⓘ

ID	Name	Top Correlation
HP: 0500006	Urethritis	2/20

Name

Top Correlation

2/20

ID	Name	Top Correlation
HP: 0000008	Abnormal morphology of female internal genitalia	0/20
HP: 0000032	Abnormality of male external genitalia	0/20
HP: 0000078	Abnormality of the genital system	0/20
HP: 0000079	Abnormality of the urinary system	0/20
HP: 0000118	Phenotypic abnormality	0/20
HP: 0000119	Abnormality of the genitourinary system	0/20
HP: 0000130	Abnormality of the uterus	0/20
HP: 0000142	Abnormal vagina morphology	0/20
HP: 0000795	Abnormality of the urethra	0/20
HP: 0000811	Abnormal external genitalia	0/20
HP: 0000812	Abnormal internal genitalia	0/20
HP: 0002715	Abnormality of the immune system	0/20
HP: 0010460	Abnormality of the female genitalia	0/20
HP: 0010461	Abnormality of the male genitalia	0/20
HP: 0010936	Abnormality of the lower urinary tract	0/20
HP: 0010978	Abnormality of immune system physiology	0/20
HP: 0012243	Abnormal reproductive system morphology	0/20
HP: 0012647	Abnormal inflammatory response	0/20
HP: 0012649	Increased inflammatory response	0/20
HP: 0012888	Abnormality of the uterine cervix	0/20
HP: 0025636	Endometritis	0/20
HP: 0030126	Abnormality of the endometrium	0/20
HP: 0030158	Cervical ectropion	0/20
HP: 0030160	Cervicitis	0/20
HP: 0030683	Vaginitis	0/20
HP: 0031105	Abnormal uterus morphology	0/20

Name

Top Correlation

0/20

0/20

0/20